Populus trichocarpa (black cottonwood): 7474535
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Entry
7474535 CDS
T01077
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7474535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7474535
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
7474535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_14
TPR_9
TPR_16
TPR_CcmH_CycH
TPR_8
TPR_19
TPR_20
TPR_12
DUF2989
BTAD
DUF6584
TPR_7
Motif
Other DBs
NCBI-GeneID:
7474535
NCBI-ProteinID:
XP_002301885
UniProt:
B9GPL2
LinkDB
All DBs
Position
2:complement(105955..115081)
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AA seq
1186 aa
AA seq
DB search
MLKSGEEQEEDLEKQRAAVVELRELEKSVEANPDDPSLRFNLAVYLWERCECKEKAAEHF
VVAVKLNPQNATAFKYLGHYYYEKEKVRALKCYQRAVSLNPDDSQSGDALCDILDQTGKE
TLELSLCTEASQKSPRAFWAFRRLGYIHLHHNRCSEAVHTLQHAIRGFPTSPDLWEALGL
AYQKLGMYTAATKSYGRAIELEDRRVFALIQSGNIFLTLGNFRKGVEQFQRALEISPQNV
SANYGLASGLLAWSKECMNMGAFRWGASLLEDACKVADKIAQLAGNFSCIWKLHGDIQLN
YAKCFPWMEDDQSVEFDVETFHASILTWKQTCYLASTFAKRSYQRALHLAPWQANLYIDI
GIASDLISSMNENYGHDQHPWQLSEKMVLGALLLEGDNYEFWVALGCLSGHNALRQHALI
RGLQLDVSLAVAWAYLGKLYREEGEKNLARLAFDCSRSIDPSLSLPWAGMSADSQIRELT
PEEAFESCSRAVQILPVAEFQIGLAKLALISGSLASSQVFGAIRQAVQKAPHYPETHNLH
GLVCEARSEYQAAITSFRLARCAINISSGDTSKSRFQEIAVNLARSLSKAGYAADAVQEC
ESLRKKGMLDSEGMQIYAFCLWQLGENDHALSVVRNLASSVSAMEQALAAASVSFICRML
YYISGLDLAVSSILKMPKEFLQSTKVWIVASAIHALDHSNRLAQAVSNSHYSLLSHDEII
EKHYLTALAKLVKHGSDYCLGFQSGISHIKKALHSYPNSNLLRNLLGHLLLSCEEWKETH
VASRCCVTEAPNCASKQGLKSGCEILGAGAVACYAIGNKDPKFSYPACGYQCLNGPGAVQ
ELQKYMRQEPWNHRAQYLLILNLLQKAREERFPSKICAILERLILVALSNEFYSRESMSY
QYQKFQLLLCASEISLQGGNIAGCIKHAKNASSLLLPNNYLFFGHLLLCRAYAAVDDYTN
LQQQFIRCLELKTDYNIGWMCLKIIESLYNVESDSKISVLSLKECSKEWKNSWNMWIAVF
NLVLGLISLWKEEYFSAEESLVQACSLASSESCLFLCHGVACIKLARQFCSSDYLSLAVS
SLTSAHATSTIPLPIVSLLLAQAEGSLGLKQNWEKNLRFEWYSWPPEMRPAELFFQMHLL
SIQSEAGFKTPSTVELCQSPLKWVLRAIHTNPSSLRYWNILRKLME
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatcgggagaagaacaagaagaagatttagaaaagcaaagagctgcagttgtg
gagttgagagagttagagaagtcagtagaagccaatcctgatgacccctctcttcgattc
aacctcgcagtgtatttgtgggaaagatgcgaatgcaaggagaaggcagcagaacatttt
gttgtagcagtgaaactgaaccctcagaatgcaactgctttcaaatatttgggtcattat
tactacgagaaggagaaggtcagggctctcaaatgctaccagagggctgtctccctcaac
ccagacgattctcaaagcggagatgcactttgtgatattttggaccagactggaaaggag
accctggagctctctctctgcactgaagcctctcaaaaatcaccaagagccttttgggct
ttcaggagactgggttacattcacctccaccataatagatgctctgaagctgttcatact
cttcagcatgccattcgaggttttcccacctctcctgatttgtgggaagctttgggtctt
gcctaccagaaacttggcatgtatactgctgctactaagtcttatggacgagccattgag
ttggaggataggagagtttttgctctcattcaaagtggaaatatcttcttgacgctcgga
aatttccgaaagggagttgagcagtttcagcgagctttggagatctcacctcaaaatgtg
tctgcaaactatgggttagcttctggactccttgcttggtcaaaggaatgtatgaatatg
ggtgcatttaggtggggagcttcattgttagaggatgcgtgcaaggttgccgataaaatt
gctcagctggctggaaatttttcatgtatctggaaattgcatggtgacattcagcttaac
tacgcaaagtgttttccatggatggaagatgaccagagtgtagaatttgatgttgagact
ttccatgcttccatccttacctggaagcaaacttgctatttagcctccacatttgccaaa
aggtcgtaccaacgtgctctgcacttggctccatggcaagccaacctttatattgacatt
ggaattgcttcagatctcatttcttctatgaatgagaattatgggcacgaccagcatcct
tggcagctatcggaaaagatggttctgggggccttgttactcgagggtgacaattatgag
ttctgggtggcactgggatgtttatctggtcataatgccttgagacagcatgccttgatc
aggggattgcaattggatgtctccttagctgttgcttgggcatatcttgggaagctttac
agagaagaaggagagaagaacttggcaaggttggcatttgattgcagcagaagtatagat
ccttcactttcattgccatgggcaggcatgtcagctgatagtcaaattagggagttgaca
ccagaggaggctttcgagagctgttcacgagctgtgcagatacttcctgtcgcagagttc
caaattggtcttgctaaacttgctttgatttcagggagccttgcgtcttcacaggttttt
ggagccatccggcaggcagtccagaaagcccctcactatcccgaaactcataacttgcat
ggtctagtttgtgaggcacgatctgagtatcaggctgctattacttcgtttcgtctagca
cgctgtgcaatcaacatttcttcaggtgacacatcaaaatctcgtttccaagagatagca
gttaatttggcacgatctctgagtaaggctgggtatgctgctgatgctgtacaagaatgt
gaaagtttgagaaaaaaaggtatgcttgattcagaaggtatgcagatatatgctttctgt
ttatggcaacttggtgagaatgaccatgcgctctctgtggtaagaaatctggcttccagt
gtttcagcaatggaacaggcacttgcagcagcttctgttagttttatctgcagaatgctg
tattacatttctggactggatttggcagtttccagcattctgaaaatgccaaaagaattt
ctccagagtacaaaagtctggattgtagcatctgccattcatgctcttgatcacagtaat
cggcttgcacaggctgtttcaaacagtcactactctcttttatcccacgatgagatcatt
gaaaaacactatttaacagctcttgctaagctggttaaacatggatcagattattgcctt
ggatttcagagtggaattagccacattaaaaaagctcttcacagttaccccaatagtaat
ttgcttaggaatctactcggtcatcttttgctatcatgtgaagaatggaaagaaactcat
gtagctagtaggtgctgcgtcacagaagctcctaactgtgcaagcaagcaaggtttaaag
tcaggatgtgaaattcttggtgctggggcagttgcttgctatgcaattggcaataaagat
ccaaaattttcttacccggcatgtggttatcaatgccttaatggacctggagctgtccaa
gaacttcagaaatacatgcgccaagaaccttggaaccatagggctcaatacttgcttata
cttaatcttctacagaaggctcgggaagagagattccctagcaaaatttgtgccatactt
gagcgtttaattttggtggcactttccaatgagttctattcaagagaaagcatgtcttat
caatatcaaaagtttcagcttttgctttgtgcttctgagatcagtttgcaaggtggaaat
atagcaggctgtatcaaacatgctaaaaatgcttcatcacttttgcttcctaataactac
ctgttttttggacacttgctgctatgtcgtgcctatgctgcagtggatgattatacaaac
ctccagcaacagtttataagatgcctagaactgaagacagattataatatagggtggatg
tgtcttaaaattattgaatctctgtataacgtggaaagtgattcaaaaatctcagtgttg
agcctcaaggaatgctcaaaagagtggaagaattcatggaatatgtggatagctgtattt
aatttggttctgggattaatatctttatggaaggaggagtacttttcagctgaagaatcc
cttgtgcaagcttgttcgctggccagttctgagagctgcctttttctctgccatggtgtc
gcatgtataaagcttgccagacagttttgtagctctgattacttatctcttgctgtaagt
agcctcaccagtgctcatgcaacttctaccatccccttgcctattgtatcgttactgtta
gcacaagcagaagggagccttggcttaaagcaaaattgggagaagaacctccgctttgaa
tggtattcttggccaccagaaatgagacctgcagaactcttctttcaaatgcatttgctt
tcaatacaatcagaagctgggtttaaaactccatccacggtggaattatgtcaaagccca
cttaaatgggttcttcgggcaatccatacaaatccgtcttctttgagatattggaacatc
ctgcgtaagcttatggaatga
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integrated database retrieval system
