KEGG   Populus trichocarpa (black cottonwood): 7480750
Entry
7480750           CDS       T01077                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7480750
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7480750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7480750
   03041 Spliceosome [BR:pop03041]
    7480750
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     7480750
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     7480750
Spliceosome [BR:pop03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    7480750
 Complex C
  U2 snRNP components
    7480750
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF150_C DUF1256
Other DBs
NCBI-GeneID: 7480750
NCBI-ProteinID: XP_002304049
UniProt: A9PD52
LinkDB
Position
3:complement(1656456..1658738)
AA seq 93 aa
MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttttcgtatttcaaggatttggtagggaaagaagtgacggtggagctgaag
aatgatttggctataagagggactcttcactctgtggatcagtacctcaacatcaagctc
gaaaacactcgcgttgtcgatcaagacaagtatcctcacatgctttctgtcaggaactgt
ttcataaggggatcagtagtgagatatgttcaacttcctccagagggtgtggatgttgat
ctgcttcacgatgccacgagaagggaagctcggggtggctga

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