Populus trichocarpa (black cottonwood): 7480750
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Entry
7480750 CDS
T01077
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7480750
09123 Folding, sorting and degradation
03018 RNA degradation
7480750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7480750
03041 Spliceosome [BR:
pop03041
]
7480750
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7480750
mRNA degradation factors
5'-3' decay
Lsm complex
7480750
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
7480750
Complex C
U2 snRNP components
7480750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
7480750
NCBI-ProteinID:
XP_002304049
UniProt:
A9PD52
LinkDB
All DBs
Position
3:complement(1656456..1658738)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttttcgtatttcaaggatttggtagggaaagaagtgacggtggagctgaag
aatgatttggctataagagggactcttcactctgtggatcagtacctcaacatcaagctc
gaaaacactcgcgttgtcgatcaagacaagtatcctcacatgctttctgtcaggaactgt
ttcataaggggatcagtagtgagatatgttcaacttcctccagagggtgtggatgttgat
ctgcttcacgatgccacgagaagggaagctcggggtggctga
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