Populus trichocarpa (black cottonwood): 7483819
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Entry
7483819 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7483819
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7483819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7483819
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7483819
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
7483819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DNA_pol3_a_NII
Motif
Other DBs
NCBI-GeneID:
7483819
NCBI-ProteinID:
XP_024451732
LinkDB
All DBs
Position
2:10740353..10761134
Genome browser
AA seq
2398 aa
AA seq
DB search
MIELSSTVPSQIRFLLHSLNEANVDSVFRDLCQFMEYELEGSILTLQTCLDYLKTDLKNM
HLEPVLASVFKFVLDKPNFATVFCQSLKSTEITEDFLEKLSNLLKLSVAEKIGTGLALSE
SENADTRMFAKKFCLAKIEELCANPVPMNSVEQIQNIVMFLQRSEGLSKHVDNFMQMLSL
MQSKDVVPFVLTPLISDELREANFLRNMDLIHGSTDSEFDAILAEMEEEMSLGDIVKELG
YGCTFDVLHCKEILSPFLPLTEVTISKILGTIARNLTGLEDNQSTFSTFGLALGCNITTD
LPQLSSWDIDVLVKTIKQLAPGTNWIQVIENLDHEGFYIPNEEAFSFLMSVYRQTCQDPF
PLHAIYGSLWKNTEGQLSFLKHAVLAPPEVFTFAHSGRQLNYIDALHGHKLQVGHSNHAW
VCLDLLDMLCQLAERGHASSVRSMLEYPLKHCPELLLLGMSHINTAYSLLQYEVSFMVFP
LIIKSAAGSGMMLYLWHLNPNLVLRGFVDAHNVEPNIMTEILDACQELKILSSVLDMIPF
PSGIRLAALASRKELIDLEKWLGNNLITYKDSFFEECLKFLKEIQPGGSQDFAAKPIHPQ
STIVNLYSETGSSFLKVLKAHTSLVISTQLSEEMERLHVTVMDSNPRLQNGSSADSSTPD
GFSDDVEAEANSYFHQMFSGHLTIDSMVQMLARFKESSVKREQLIFECMIGNLFEEYRFF
PKYPERQLKIAALLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALENFV
DRLIEWPQYCNHILQISHLRGTHADLVAFIERALARISSGHLESDGINNASAAHHHGLSQ
AASVNGESNSINIQQAGQQLSSTLHLQQRHESSLDDRLKASAAPFNETKQFASAAPFNES
KQFLSSSVQSSVAPSSDVSSIQKGTVTSSALLSSPGSVRPFRVVTSTRFGSALNIETLMA
AAERRETPIEAPGSEIHDKVSFMINNISVANVEPKAKEFTEILKEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMG
ILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDI
GASQPQMLPEVKSGIISPLNHVELPLEGASPPNSGVHAHMLSQYTSPVHLSSGTLMEDEK
LAALGLSDQLPSAQGLFQATPSQSTFPASQLPTAIPNIGTHVIINQKLNSWGLHVHFQRL
VPTVMDRAIKDIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSL
AHVTCKEPLRSSISSQLRNSVQGFSLTSEILEHAVQLVTNDNLDLGCAVIEQAATDKAIQ
TIDTEIAQQLLRRKHRDGVGPAFFDANMYTQSSMGVVPEALRPKPGHLTPSQQRVYEDFV
RLPWQNQSSQSSHVIPTGSASSGATGLASAYGSVSLDVASEAIESNSAALLSSASIHSAT
ADGVIQQSSENNSTSASISATTSSELSPVESSDVVKEAGVSSQPSSSSVASERVGSSIAD
ASLNTRDALDKYQIIAQKLETLVTSDSREAEIQGVVAEVPEIISRCVSRDEAALAVAQKV
FKGLYENASNSFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITLGLMRSE
LLNLAEYNVHMAKLIDGGRNKVATDFAVSLIQALIVEESSVISELHNLVDALAKLAAKPG
SSESLQQLIEIARNPGVNAAALTSPALGKEDKTRQSRDKPSNQLIASREEYSNIEPVEPD
GFHEQVSMLFAEWYRICELPGANDAASNHYILQLHQNGLLKGDETTDRFFRVLMELSVAH
CLSSEVINSSVLQSPHQMQNLSFLAIDIYAKLVIAILKVEQGSSKLFPLSKILSITVRFI
QKDSEEKKNSFNARPYFRLFISWLQDLLSPEPVVDGVNFQILTAFAGAFHNLQPLKVPGF
SYVWLSLVSHRSFMPRLLIGNAQKGWPYVQRLLVDLFQFLEPYLRNAELAVPVHLLYKGT
LRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPLNMRLPDPSTPNLKIDLL
PEIREPPHILSEVDAALKVKQMKADVDEYLKTRQQGSSFLTELKQRLLLSPSEAASAGTR
YNVPLINSLVLYAGMQAIQQLQARTSHGQSAGNTVPLAVFLVDAALDIYQTLILDLDTEG
RYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGL
LITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPMDDSMVSGWVSESAH
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgattgagttatcttcaacagtaccgagtcagattcggttcctccttcattccttgaac
gaagctaacgttgattccgtctttcgtgacctctgccagtttatggagtatgaacttgaa
ggaagtattttgacgctccaaacatgtttggattatttgaagactgacttgaaaaacatg
catttggaacccgtacttgcatcggttttcaagtttgttttggacaaacccaatttcgct
accgtgttttgtcagtctttgaaaagtacggagatcactgaagatttcttagagaagttg
tccaatttattgaagttatctgtggctgagaaaattggcactggtctcgcgctctctgaa
tcagagaatgctgataccaggatgttcgctaagaagttctgtttggctaaaattgaggaa
ttgtgtgcaaatcctgttccaatgaactctgttgagcaaattcagaatattgttatgttc
ctccagcggtctgaggggctttccaagcatgttgataactttatgcagatgttgtcgtta
atgcagtccaaagatgttgtcccatttgttttaactccgttgatttctgatgaattgcgc
gaggccaattttttgaggaatatggatctcatccatggaagtacagatagtgaatttgat
gctattttagctgaaatggaggaggagatgagcctgggagatattgtgaaagagttaggc
tatggatgcacatttgatgtgttgcactgcaaagaaatattatccccttttctaccactg
acagaagttaccatttctaagatacttggaacaattgcccgcaaccttaccggtcttgag
gacaaccagagcacattttcaacgtttggcttggctcttggttgtaacattacaactgat
cttccacagttaagctcctgggacattgacgtccttgtaaagacaatcaagcaacttgct
cctggtactaactggattcaagttattgaaaacctggatcatgaaggattttacatacct
aatgaggaggcattctcctttctgatgtctgtatatagacagacatgccaggatccgttc
cctctccatgccatctatgggtctctttggaagaatactgaaggtcagctatcttttctg
aaacatgcagtactggcaccaccagaagtgttcacctttgcccattctggaaggcagctg
aactatattgatgctttgcatggccataagcttcaagttgggcattctaatcatgcgtgg
gtgtgccttgaccttttggatatgctttgtcaactggctgagaggggtcatgctagttct
gttcgatcaatgcttgagtatcctctcaaacactgtccagaattgttgcttcttgggatg
tcacatatcaatactgcctacagcctcctccaatatgaagtgtcttttatggttttccct
cttataatcaaaagtgctgctggtagtggtatgatgctttacctctggcatctgaaccct
aatcttgtgttgcggggatttgtagatgctcacaatgttgaaccaaacatcatgactgag
atattggatgcttgtcaagagctaaagattttgtcatcggtattagacatgattcccttt
ccttctggtatcagattagcagcccttgcttcaagaaaagagcttatagaccttgaaaag
tggctgggtaataatttaattacatacaaggattcattcttcgaggaatgtctcaagttt
cttaaggagattcagcctggtggatcacaggattttgcagccaaacctattcatcctcaa
agtaccattgtgaatctttattcagagactggttcatccttcctgaaggtccttaaagcc
cataccagcttagttatatctacccaactttctgaggaaatggaaaggttgcatgtaaca
gttatggactctaatccaaggctgcagaatggtagctcggcagattcatctacccctgat
gggttttcggatgatgttgaggcagaggcaaactcttatttccatcaaatgttttctggt
catctgacaatagattccatggttcaaatgcttgctcgattcaaggaatcttctgtgaaa
agggaacaattgatttttgagtgcatgattggcaatctatttgaagaatatagattcttc
ccaaagtatccagaaaggcaactaaaaattgctgctcttctttttggttctgttatcaag
caccagcttgttactcatctcactcttgggattgccttgcgtggtgttttagacgcgctt
cggaaacctccagattccaaaatgtttgtgtttgggaccaaggctttggagaattttgtg
gatcgtttgattgaatggccacagtattgcaatcacatcttacaaatatcgcatctgcgt
ggcactcatgctgatcttgttgctttcattgaacgagcacttgccaggatttcatcaggg
catttggaatcagatggaattaacaatgcttctgctgctcatcaccatggtttgtctcag
gctgcctcagtaaatggagagtcaaatagcattaacattcaacaggctgggcagcagctt
tcctctacactccatcttcaacagagacatgaaagttctcttgatgaccgtttgaaagca
tctgctgctccatttaatgagactaaacaatttgcatctgcggctccatttaatgagagt
aaacaatttctatcttccagtgtgcaatcttcagttgccccctcaagtgatgtttctagc
attcagaagggtacagttacttcttcggctttgttatcttctcctggttctgtccgtcct
ttccgagtagttacctccaccaggtttggctctgcattgaacatcgaaacacttatggct
gctgctgagagaagagaaacaccaatagaggctccaggatcagagattcatgacaaagta
tcattcatgattaataatatttcagttgcaaatgttgaacctaaagcaaaagaatttact
gaaatactaaaggagcagtactatccctggtttgcgcagtacatggtcatgaaaagagca
agcattgagcccaattttcatgatttgtacttgaagttccttgataaagttaattcaaaa
gctttaaataaggagattgtccaagccacatatgaaaactgcaaggttcttttgggatca
gagcttataaaatctagttcagaagagcgttcattgcttaaaaatttgggaagttggctt
gggaaattaactattggaaggaaccaagttctgagggcacgtgagatagatcccaaatct
ttgatcatggaggcatatgagaagggattgatgattgcagttataccatttacatccaag
gttctagagccatgccaaaacagtctagcataccaacctcctaatccttggactatgggc
attcttggattgctggctgagatctactcaatgccgaacttgaaaatgaacctcaaattt
gatatagaggtattgttcaagaaccttggtgtagatatgaaggacatagcaccaacttct
cttcttaaggaccggaaaagggaaatcgaagggaatcctgatttttccaataaagatata
ggagcatcccaaccacagatgcttccagaagttaaatctggaattatatctcccctaaat
catgttgagctaccacttgagggtgcaagcccacctaattctggcgttcatgctcatatg
ttatctcagtacacctctcctgtccatctttcttcgggtacattgatggaggatgaaaaa
ctagctgcattaggcttgtctgatcagctcccttctgcacaaggactattccaagctact
ccatcccagtcaacatttccggctagtcagcttcccacagcaatacctaacatcggaact
catgttattatcaatcagaagttaaattcttggggcttacatgtgcattttcaaagactg
gttcctactgtaatggacagagccatcaaagatattgtctctggtattgttcagagaagt
gtttctattgcaacacagacaacaaaagagcttgttttgaaggattatgccatggaatcc
gatgaaacacgaatatataatgcagcgcacttaatggttgccagtttggctggaagctta
gctcatgtaacatgcaaggagccattacgtagttcaatatcaagtcagctaaggaattca
gttcagggtttctccttaacaagtgaaattctggagcatgctgtgcaacttgttactaat
gataaccttgatcttgggtgtgcggtgattgaacaggctgctactgataaggccatacaa
accattgacacggaaatagctcaacaacttctaagaaggaagcatagagatggtgttggt
ccagcattttttgatgcaaacatgtacacccaaagttctatgggcgttgtacctgaggcc
cttcgccccaagcctggtcacttgactccctctcaacagcgagtttacgaggattttgtt
cggcttccgtggcaaaaccaatctagccagagctcacatgtcatccctacgggttctgct
tcttctggtgctactggtcttgctagtgcatacggttcagtttcattggatgtggcttca
gaagccattgaatctaattcagctgcacttcttagttctgcatcaattcatagtgcgacg
gctgatggtgttatccaacaaagttctgaaaacaattccaccagtgcttcaatttctgct
accacttcctctgaacttagtccagtggaatcctcagatgttgtaaaggaagcgggagtt
tcttctcaaccatcatcttcatcagttgcttctgagcgtgttgggagtagcattgcagat
gcttcattgaacactagggatgcgttggacaagtaccagattattgcgcagaagttggag
actttggtgactagtgattctagagaagctgaaatccagggggtagttgcagaggttcct
gaaatcataagtagatgtgtcagtcgagatgaggctgccttggctgtagcacaaaaggtt
ttcaagggtttatatgagaatgcatcaaacagttttcacgttaatgcctgccttgctatt
ctggctgcaattcgtgatgtgtgcaagcttgtggttaaagaactcactagctgggtgatt
tactcagacgaggagcgaaagttcaataaagatattacccttggcctgatgcgtagtgaa
ttgctcaaccttgcagagtacaatgttcatatggcaaaactcattgatgggggaaggaat
aaggttgcaacggactttgctgtttccctcatccaagctttgattgttgaagaatccagt
gtcatctctgaactccacaatcttgtcgatgctctggccaagcttgccgcaaaacctgga
tcttccgagtcattacaacagcttattgagattgctaggaatcctggtgtcaatgcagct
gctctaactagtccagctcttggaaaggaggacaagacaagacagtctagagacaaacct
tccaatcagttgatagctagcagggaagaatatagcaacattgaacctgtggaaccagat
ggttttcatgagcaggtttccatgctttttgcggaatggtatcggatatgtgaacttcct
ggtgcaaatgacgcagcttctaaccattacatcttacagctgcatcaaaatggattgctg
aagggggacgagacgacagatcgcttttttcgcgtactcatggagctctctgttgcgcac
tgcttgtcctctgaggtgatcaattctagtgtactgcaatcacctcatcaaatgcagaat
ctctccttccttgctattgatatctatgcaaaattggtcattgcaatcctaaaggtggag
cagggatcaagtaaactctttcctttgtcaaagatcttgtccatcactgtgagattcata
caaaaggattcggaggagaagaaaaattcttttaatgcaagaccatatttcagattgttt
ataagttggcttcaagatctcctttccccagagcctgttgtcgatggtgtaaactttcag
atcttgacagcctttgctggtgcattccacaatctgcagccccttaaagttcctggtttc
agctatgtatggctctcattggtgagtcataggagtttcatgccaagattgctcatagga
aatgcacagaagggctggccctatgttcagcggttgctggtagacttgttccagttcctg
gagccctatttgaggaatgccgagctggcagtgccagttcacttgctatataaaggtaca
cttagggtgcttttggtgctgctacatgatttccctgagttcctttgtgattaccatttc
actttctgtgatgtgattcctccaagctgcatacaaatgcgtaatattattcttagtgct
ttccccctcaatatgaggcttccagatccatcaactcccaacttaaagattgatttgctt
ccggaaattagggaacctcctcacattctctccgaggttgatgcagctcttaaagtaaag
cagatgaaagctgatgtagatgagtatctcaagactaggcaacagggttcttcattcctg
actgaattgaagcagagattgctcctttcacctagtgaagctgcatctgccggaacccgt
tataatgtaccgttgatcaactcccttgtcctttatgctggaatgcaggccatccagcag
ctgcaggcaagaacatctcatggacaatcggcaggaaatactgttcctttagctgtattt
ttggtggatgctgctttagatatctaccagacgcttatactggacctagacacagaaggc
cgatacctctttctaaatgctgttgctaatcaactgcgctatccgaataaccacacacat
tacttctcctttgttttgctttacttatttgctgaatcaaaccaggaaattatccaagag
cagattacaagagttcttttggaacgtctaattgttaatcgaccacatccgtggggcctt
ctgattactttcatcgagctcatcaagaatcctagatacaacttttggaatcgatcgttc
ataaggtgcgcaccggagatagagaaactatttgagtcagttgctagatcatgcggcggc
ttgaagcccatggatgacagcatggtctctggttgggtttctgagagcgcacactga
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integrated database retrieval system
