Populus trichocarpa (black cottonwood): 7485588
Help
Entry
7485588 CDS
T01077
Name
(RefSeq) syntaxin-124
KO
K08486
syntaxin 1B/2/3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
7485588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7485588
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7485588
Membrane trafficking [BR:
pop04131
]
SNARE
Syntaxin (Qa)
Stx-PM
7485588
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
7485588
Exosomal proteins of other body fluids (saliva and urine)
7485588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
DUF3899
Syntaxin-6_N
CD225
Helo_like_N
DUF5790
HTH_25
Spore_III_AB
DUF1664
EssA
DUF1676
MCPsignal
Motif
Other DBs
NCBI-GeneID:
7485588
NCBI-ProteinID:
XP_002317241
UniProt:
B9HYZ9
LinkDB
All DBs
Position
11:3418307..3420536
Genome browser
AA seq
302 aa
AA seq
DB search
MNDLFSSSFKKYTDLKQQAQIDDMEAGKEGMNLDRFFEDVENIKEDMKTVERLYRSLQEA
NEESKTVHNAKTMKNLRSRMDMDVEQVLKRVKIIKGKLEALDRSNAAHRNIPGCGPGSST
DRTRTSVVSGLGKKLKDLMDNFQDLRARMAAEYKETVERRYFTITGERASDETIENLISS
GESESFMQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVEAQGHQ
LNDIESHVAHASSFVRRGTEQLQEAREHQKSSRKWTCIAIIAGVVLIVVMLLPFLPQILA
LL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatttgttctcgagttcgttcaagaagtacactgacctcaagcagcaggctcaa
attgatgacatggaggcagggaaggagggtatgaatctggacagattctttgaagatgtc
gaaaatattaaggaagatatgaaaactgttgagaggctgtacaggagtttacaagaagcc
aatgaagaaagcaagactgttcacaatgctaagaccatgaaaaatcttcgttcgcggatg
gacatggacgttgaacaagttctgaaacgtgttaaaatcatcaagggaaagctcgaagcc
ttagatcgatccaatgcagctcaccgcaatattccagggtgtggtccaggatcatctacg
gatcgaaccaggacatctgtggttagtggtttgggaaagaagctcaaggatctcatggat
aattttcaggacttgagagctagaatggcagctgaatacaaggaaactgtggagcgcagg
tatttcacaatcacaggagaaagagcaagtgacgaaacgattgagaatttgatatccagt
ggtgaaagtgaaagtttcatgcaaaaggcaattcaggaacaaggaagaggccagattctt
gacacaatatcagaaatccaagagagacatgatgctgtgaaggagatagagaagaatttg
attgagcttcaccaggtattcttggatatggctgctcttgtggaagctcagggtcaccag
ctgaatgatattgaaagtcatgttgctcacgccagctcgttcgtgcggcgaggaactgag
cagcttcaggaagccagggaacatcagaagagctctcggaagtggacgtgcattgccatc
atagctggtgttgtcctcattgttgtcatgctactaccatttttaccacagatcttggct
ctcttgtag
DBGET
integrated database retrieval system