Populus trichocarpa (black cottonwood): 7489812
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Entry
7489812 CDS
T01077
Name
(RefSeq) transcription factor SPEECHLESS
KO
K20558
transcription factor SPEECHLESS
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
7489812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7489812
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
7489812
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Motif
Other DBs
NCBI-GeneID:
7489812
NCBI-ProteinID:
XP_024438109
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Position
12:903098..906645
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AA seq
354 aa
AA seq
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MVKRSFKMTESLSDFLEEVQPEFGDTAFDADDLFAIFESLDSVTDFPPVTPLDEAVVSSK
ESEETRQLVSQKSSSSNALHDFDETNNELETSPKSKRQKISASAAATASSDQEVNPDGQQ
RMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAK
KKRKVYSEVLSPRIVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPCSPYKPRILQQGYLS
PTMANSLESSPSPSSSSSINDNINELVANSKSAIADVEVKFSGPNVLLKTVSPQIPGQAV
KIISALEDLALEILHVSISIVDHETMLNSFTIKIGIECQLSAEELAQQIQLTFC
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaacgttcgttcaaaatgactgagagtttgtctgattttcttgaagaagtacaa
cctgaatttggcgacactgcctttgatgcagatgatttgtttgctatttttgagagttta
gacagtgtaacagatttccctccggtaacaccattagacgaagctgttgttagctcaaaa
gaaagcgaagaaacaaggcagttggtgtcacaaaagtcttcatcttctaacgctttgcat
gattttgatgagaccaataatgagcttgaaacttctccaaaaagcaagagacaaaagatt
tcagcgtcagcagcagccacagcttcttcagatcaggaagtaaatccagatgggcagcaa
cgtatgtctcatattacagtggaacgcaaccggcgaaagcagatgaatgagcacttgtct
gttttaaggtccctcatgccttgcttctatgtcaaaagaggagaccaagcatcaataata
ggaggagttgttgattacatcaatgagttgcagcaagttctacaatcacttgaagccaag
aagaaaaggaaagtttatagtgaagttcttagccctaggattgtttcaagtccaagacct
tcaccacttagccctagaaaaccaccactaagtcctagacttaatttgcccattagccca
agaactccacaaccatgtagtccttacaagccaagaatattgcaacaaggttacctttct
cctaccatggctaattcacttgaatcatctccatctccatcttcttcctcctccattaat
gacaacattaacgaactcgtcgcgaattccaagtcagcaattgctgatgttgaggttaaa
ttctcaggcccaaatgttctattgaagactgtatctcctcagattcctggtcaggctgtg
aaaataatttctgcccttgaagaccttgccctcgagattctacatgtgagcattagcata
gtagatcatgaaactatgctcaactccttcacaatcaagattggaatcgaatgccaacta
agcgctgaggaacttgctcaacaaattcagctaacattctgctaa
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