Populus trichocarpa (black cottonwood): 7491448
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Entry
7491448 CDS
T01077
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1-3
KO
K03265
peptide chain release factor subunit 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7491448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7491448
03012 Translation factors [BR:
pop03012
]
7491448
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
7491448
Translation factors [BR:
pop03012
]
Eukaryotic type
Release factors
7491448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
Motif
Other DBs
NCBI-GeneID:
7491448
NCBI-ProteinID:
XP_002297898
UniProt:
B9GMX4
LinkDB
All DBs
Position
1:5415864..5418716
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AA seq
436 aa
AA seq
DB search
MSDGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASN
IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPIN
ASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHG
RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQS
DMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTG
KYVFGVDDTLKALEMGAVETLIVWESLDINRYQLKNSATGEVTIKHWNKEQESNQGNFRD
SVTNAELEVQDKTPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM
RSFDELSDEEVYDDSE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacggtcatgagactgataagaacattgagatttggaagattaagaagcttatc
aaagcactggaagctgcccgaggtaatggcacaagcatgatttcccttatcatgcctcct
cgtgatcaggtttctcgtgtcactaagatgcttggagatgagtttggaactgcttcaaac
attaagagcagggtcaatcgtcaatctgttctgggtgccattacatctgctcagcaaagg
ctcaaactttacaacaaggttcctcccaatgggcttgtgctttacaccggaacaattgta
accgaagatgggaaggaaaagaaagtaactattgactttgagcctttcaggcccataaat
gcatctctttacctctgtgacaacaaatttcacacagaagctctgaatgaactcttggaa
tctgatgacaagttcggctttattgtcatggacgggaatggaactctttttgggacactg
agtggcaacaccagagaagtgctgcataagtttaccgttgaccttcctaagaagcatggg
agaggaggacagtctgctcttcgatttgctcgacttcgaatggagaagcgccacaactat
gtgagaaagacagcagaacttgccacccagttctatatcaatcctgccaccagccagcct
aatgtttcgggattgatacttgctggatcagctgacttcaagactgagctgagtcaatca
gatatgtttgatcctcgacttcaggcaaaaattctgaatgttgttgatgtttcctatgga
ggagagaatggttttaatcaggcaatcgagctgtcagcggaaattctttccaatgtgaaa
tttatacaggagaagcgcttgataggaaagtactttgaagagataagtcaggatactggg
aaatatgtttttggtgtagatgacacactgaaagctttggaaatgggtgctgttgaaact
ttaattgtttgggaaagtttggatattaataggtaccagttgaaaaactctgccactggt
gaagttaccataaaacattggaataaggagcaggaatccaaccagggcaactttagggat
tcagtaaccaatgctgaattagaagttcaggataagactccactgctggagtggtttgct
aacgagtacaagcggtttggttgctctctagagtttgttactaacaaatcacaagaagga
tcccagttttgtagagggtttggcgggattggtgggatcctccgttaccagcttgatatg
agatcatttgatgagctttcagatgaagaagtttatgatgattctgaatag
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