Populus trichocarpa (black cottonwood): 7492293
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Entry
7492293 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7492293 isoform X2
KO
K15082
DNA repair protein RAD7
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7492293
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
7492293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_4
LRR_NXF1-5
LRR_6
LRR_At1g61320_AtMIF1
LRR_RPS2
DUF2259
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
7492293
NCBI-ProteinID:
XP_002309465
UniProt:
B9HD06
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Position
6:complement(22581973..22588089)
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AA seq
679 aa
AA seq
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MDSGEKKEKEKWGLDLNLSTQEEFSTGLGFQDFLGEEKEAENDQLGHDFGRDSDFRIRER
DSVVETDDFTSSKRLRYTTEEKGKAKVDCEVNLDFDLNLDLWGFEKDPVEGKMDTWPFEA
GLLSSGPVMHNFFPDSVERNTQVENYDVPRKDIVFEQRKEIALSSVRKRQSRRKEQKLMQ
REIARNVAPRFAHLGPQEQQMKQHKEKKVKLREVDLEMELDLDDSQSPFSLALEAIKMRQ
TVRKGSLTGFSESLFKWVPAKAKDCDALKRDVPTLLDLSLNALAKNADAIVSLEHVPDKL
RHRLSQLVSDCGVVDAHFVELLARGSPTEIRLRNISRLTEEEFSKIFSVCDTKDLTVLQL
DLCGRCMPDYILNGTLARSSHRLPSLATISLKGAHRLSDIGLTQLAVSAPALQSINLSQC
SLLTSQGISDFVSCFESTLRELYIDDCQNIDATIILPALKKLKCLEVLSVAGIETVCDNF
VIGLVKALGINMKELGFANCVQLTDISLRIVGKNCPNLCALDLSYLHNLTDSALKHLANG
CQSIRRLKLHRNDFSDEAISAFLEVSGQSLDALSVNNIHRVAHNTALSIAKCSRNLVSLD
LSWCRRLTDEALGMIVDSCLSLKLLKLFGCTQITEAFLNGHSNPMVRIIGCKTGPVLEHL
DALEPQENPLRYSPLTSFC
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggaaaaaaaagagaaggaaaaatggggtcttgatttaaatttatctaca
caggaggagttttcaactggtttagggtttcaagattttttaggggaagagaaagaagct
gaaaatgaccaactgggtcatgattttggtagagatagcgattttaggataagggaaaga
gactccgttgttgaaacggatgattttactagtagtaagagattgaggtacacaactgaa
gagaaggggaaggctaaagttgactgtgaagtgaatcttgattttgatcttaatcttgat
ttgtggggatttgagaaagacccagttgaagggaaaatggatacatggccatttgaagca
gggttattgagttcagggcctgtgatgcacaatttctttcctgatagtgtagagagaaat
acccaggtggagaattatgatgttccaagaaaggacatcgtttttgaacaaagaaaggag
atagctttgtcaagtgtaaggaagagacaatcaagaagaaaggaacagaagttgatgcag
cgtgaaattgctaggaatgttgctccacgatttgcacatttaggtcctcaagagcagcag
atgaagcagcataaagaaaagaaagttaaattgagagaagttgatttggaaatggaactg
gacttggatgattctcaaagtccattttcattggcactggaagcaatcaaaatgcggcaa
actgttcgaaaagggtcattaactggtttctctgagtcgctcttcaaatgggttcctgca
aaagctaaagattgcgatgctctgaaacgcgatgttcctacacttctggacctcagtttg
aatgctcttgcaaaaaacgctgatgctattgtgtcacttgaacatgttccagataaatta
cggcatagacttagtcagttggttagtgattgtggagtagtggatgctcactttgttgaa
cttcttgcaaggggctctccaaccgaaattcgtctgaggaatatttcgcggttgacagaa
gaggagttttccaaaatatttagtgtttgtgacaccaaggacttgactgtgctacaactt
gacctttgtggacgatgcatgcctgattatatattaaatggcaccttagccaggtcatca
catagacttccttccttagctaccatatctttgaagggtgcacatcgtttgtcagatatt
ggactaactcagttggctgtgtctgcacctgcattacagtctataaatctgagccagtgc
tcccttctcacatctcaaggcatcagtgatttcgttagctgttttgaatctactttgagg
gagctgtatatagatgattgtcagaatatagatgcgacaattattttacctgcactgaag
aaactcaagtgcctagaagtgttgtcagtagcaggcatcgagactgtttgtgacaatttt
gtcattggactggtcaaagcacttggcataaacatgaaagagcttggtttcgctaattgc
gtgcaactgactgatatatcacttcgaattgtaggcaaaaattgtcccaacttatgtgct
ctggatctttcttacttgcataacttgacagactctgcattaaaacacctagccaatggt
tgccaatcaattaggagactcaaacttcaccgaaatgatttcagtgatgaagctatttct
gccttcttggaagtctctggacagtctctggatgcactttcagttaacaatatccatagg
gttgctcacaacactgccttatcaattgccaaatgttcaagaaatttggtgagtttggac
ttatcatggtgccgcagattaacagatgaggcactaggaatgattgttgatagctgctta
tcactgaagctgctcaagctatttggatgcacgcagattacagaagcatttctaaatggc
cactcaaaccccatggtgcgaatcattggatgtaaaactggaccagtgttggagcatctt
gatgcgcttgaacctcaagaaaatcctttgcgatattctccactgacaagcttttgctga
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