Polaromonas sp. SP1: DT070_18030
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Entry
DT070_18030 CDS
T05689
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pos
Polaromonas sp. SP1
Pathway
pos02024
Quorum sensing
pos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DT070_18030
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DT070_18030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pos03019
]
DT070_18030
03036 Chromosome and associated proteins [BR:
pos03036
]
DT070_18030
Messenger RNA biogenesis [BR:
pos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
DT070_18030
Chromosome and associated proteins [BR:
pos03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
DT070_18030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AYQ29744
LinkDB
All DBs
Position
complement(3793994..3794263)
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AA seq
89 aa
AA seq
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MNTENIVSNNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQ
MVYKHAISTIVPGRAVNFATSESEESPAS
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
ttgaacacggaaaatatcgtgagcaacaacaaaggccagctcttgcaggacccatttctc
aacaccttgcgtcgcgagcatgttcctgtttccatttatctcgtcaacgggatcaaattg
cagggccagatcgaatccttcgatcaatacgtggttctgcttcgcaacactgtgacccag
atggtctacaagcatgcgatctccaccatcgttccgggtcgcgccgtgaatttcgcgacc
agtgagtctgaagaaagccccgccagctga
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