KEGG   Polaromonas sp. SP1: DT070_18030
Entry
DT070_18030       CDS       T05689                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pos  Polaromonas sp. SP1
Pathway
pos02024  Quorum sensing
pos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DT070_18030
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DT070_18030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pos03019]
    DT070_18030
   03036 Chromosome and associated proteins [BR:pos03036]
    DT070_18030
Messenger RNA biogenesis [BR:pos03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DT070_18030
Chromosome and associated proteins [BR:pos03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DT070_18030
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AYQ29744
LinkDB
Position
complement(3793994..3794263)
AA seq 89 aa
MNTENIVSNNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQ
MVYKHAISTIVPGRAVNFATSESEESPAS
NT seq 270 nt   +upstreamnt  +downstreamnt
ttgaacacggaaaatatcgtgagcaacaacaaaggccagctcttgcaggacccatttctc
aacaccttgcgtcgcgagcatgttcctgtttccatttatctcgtcaacgggatcaaattg
cagggccagatcgaatccttcgatcaatacgtggttctgcttcgcaacactgtgacccag
atggtctacaagcatgcgatctccaccatcgttccgggtcgcgccgtgaatttcgcgacc
agtgagtctgaagaaagccccgccagctga

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