KEGG   Paralichthys olivaceus (Japanese flounder): 109631161
Entry
109631161         CDS       T06037                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
pov  Paralichthys olivaceus (Japanese flounder)
Pathway
pov04382  Cornified envelope formation
pov04510  Focal adhesion
pov04512  ECM-receptor interaction
pov04518  Integrin signaling
pov04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pov00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109631161 (col4a1)
   04518 Integrin signaling
    109631161 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109631161 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109631161 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    109631161 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pov04147]
    109631161 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:pov00536]
    109631161 (col4a1)
Exosome [BR:pov04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   109631161 (col4a1)
Glycosaminoglycan binding proteins [BR:pov00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109631161 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 109631161
NCBI-ProteinID: XP_019945319
LinkDB
Position
Unknown
AA seq 1581 aa
MLLPSGALFLLAALYCSTDLTQAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGAMGPKGDLGEPGASGMKGVRGPPGLPGFPGNPGLPGINGNDGPPGSQGIPGCN
GTKGERGRDGTSGFPGLQGPPGIPGIPGIKGDAGGVIGIVPLKGDRGFPGTPGLPGSIGP
SGPTGPPGPRGYQGPKGDLGPPGPPGEKGDKLAFVSEKGEKGEQGFRGPPGPPGPPSQGV
EGHTTVYVPGPAGEKGERGPPGFGNGAPGPPGPRGLPGLQGEKGFSGPQGEAGPPGRHIE
GPRGEMGQKGDMGEKGENGIEGVSLVGPPGQPGIPGPPGPPGLPIGSSQCNIQKGAPGPD
GPPGLQGEVGQKGDRGDTCVQCEAFGPPGLPGPQGPKGDHGPPGPVGSKGEKGQLGTPGQ
PGRPGTQGTPGLLGAPGSVGEPGDIFIAPGLKGDKGLPGLAGSPGRPGVNGQLGRDGLPG
VPGLKGEPAKEGIKGERGFDGDPGRIGTPGERGPPGLPGIGQPGEPGDKGNPGRPGIPGA
SGEPGAKGEPGVSMSTPGPQGVPGPRGETGRPGLPGDRGLLGDAGLPGFPGQKGEQGPSG
IGFPGPTGPKGISGIPGATGLPGEPGRPGQDGFSGQPGSPGQKGEPGRGLPGPKGLQGPP
GISGFEGEKGNIGLPGIPGQEGQTGPPGPQGITGDVGPPGPPGLVGLPGEPGKGSPGAPG
PQGQPGEPGPHGSVGVKGEKGYPGPSGLDMPGLQGEKGAPGFPGPAGSKGLPGRTGLPGR
DGLIGSQGPKGEMGVIGTPGLPGFPGISGTPGSPGLRGDPGKTGPRGDIGEPGPKGERGE
PGLQGPPGKMTDIEMEHVKGEKGDLGDLGNPGVSGEKGHRGMSGDPGMPGKDGEPGLPGQ
PGEKGDPGFPGEPGGMGQPGQKGNIGEMGIPGVVGPKGTKGEFGTPGHPGFRGTDGQKGD
RGAAGDPGLGIPGHPGEKGQTGQPGFPGSPGEKGQKGHEGMPGKPGLQGLKGENGSIGYP
GQPGRPGEKGTPGLPGSAGVPGHEGRPGEGGLQGPPGPPGEKGEHGVDGIPGSSGERGEP
GFPGRGFPGPPGDFGGKGDKGSPGFPGTPGHPGVPGIKGDKGLPGSQGPHGETGERGLPG
GSLEGPKGVRGETGQPGEPGSPGAPGPAGVPGRDGKKGDRGEQGPPGFQGEAGHKGDPGI
VGLPGQDGLPGIDGQKGERGLQGVPGFPGVKGNFGDIGFKGELGDRGFPGEKGSEGPPGP
PGPHTFIKGDIGFPGIQGPPGPQGPFGFPGQKGQQGLTGISGPKGEDGLPGYHGQPGAKG
EPGLSGPEGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQTVEVPYCPEGTSLIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMSMAPITGEGIKPFISRCAVCEAPAMVIAVHSQSIMIPSCPLGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPT
TLKAGSLRTHISRCQVCMKRT
NT seq 4746 nt   +upstreamnt  +downstreamnt
atgctgttaccgtccggcgccctgttcctgctggcggctctctactgcagcacagacctg
acacaggctgagggttgtgggacatcgtgtgggaaatgtgactgcagcggcgtgaaagga
gcaaagggtgagcggggatttcctggtcttcaaggtaatatgggatttcctgggatgcag
ggccctgaggggcctccaggagcaatgggccccaagggagatctgggtgaaccgggggct
tctggaatgaaaggagtgaggggtcctcctggtctgccaggtttcccaggaaacccagga
ctaccaggcatcaatggaaacgatggcccaccaggttcacaaggtatcccaggatgcaat
gggactaaaggagaaagaggacgggatggcacttctggttttcctggtcttcaaggacct
ccgggaatcccaggaattcctggaataaagggtgatgctggtggtgtgatcgggattgtt
cccctgaaaggagacagaggattccctggcacacctggattacctggatcaatcggacct
tctggacccacgggacctccaggacctcgcggctaccaaggacccaaaggtgatctaggc
cccccaggccctcctggagagaagggtgacaagctggcttttgtgagtgaaaagggagaa
aagggtgaacaaggatttcggggcccccccggtcccccaggacctccatcacagggagtg
gaaggacacaccacagtttacgtacctggacctgcgggtgaaaagggagaacgaggacca
ccaggttttggtaatggtgcccctggccctcctggtccgcgtggtctcccagggttacaa
ggagaaaaaggtttttctgggcctcagggagaggcaggtccaccaggccgacacatcgaa
gggcctcgaggagagatgggtcagaagggagacatgggtgagaaaggagagaacggtata
gagggagtgtctctggttggacctccaggacaaccaggtatccctggaccccctggacca
cccggactcccaattggttctagtcaatgcaacatccagaaaggtgctcctggcccagat
gggcctccagggttgcaaggggaagttggacaaaaaggtgacagaggagatacctgtgtt
cagtgtgaggctttcggaccacctggtttacctggtccccaggggcctaagggagatcac
ggaccacctgggccagttggaagcaaaggagaaaagggtcagttaggcactcccggacaa
cctggacgacctggtactcagggcactcccgggttgctgggagctcctggttctgttggt
gagcctggcgacattttcatagctcctggtctgaagggagacaaaggtcttcctggtctt
gctggttcaccggggcggccaggagtgaatggacagttagggagagacggcctcccgggt
gtacctggcctcaaaggagaacctgccaaagagggcattaagggtgagcgtggatttgat
ggggaccctggtcgtattggaaccccaggagaaagaggtcctccaggtcttccaggcatc
ggccaaccaggagagcctggagataaaggcaatccagggagaccaggaattcctggagct
tccggagaaccaggtgcaaaaggtgagccaggtgtgagtatgagcactccaggacctcag
ggagtacctggaccacgtggagaaactggcagacctggacttccaggggacagaggtttg
ctgggagatgcaggattgcccggtttccctggacagaaaggtgaacaaggaccctctgga
atcggttttccagggccaacaggtccaaaaggaatcagtggaattccaggagctacagga
ttaccaggagagccaggaagaccaggacaggatggtttcagtggacaacctggttcacct
ggacaaaaaggtgaaccagggcggggtcttcctggcccaaaaggtttgcagggccctccg
ggaatttctggttttgagggagaaaagggtaatattggactacctggtattcctgggcaa
gaagggcagacaggacctcctggaccccagggaatcacaggtgacgtgggacccccaggg
cctcctggactggttggcttaccaggtgaaccaggaaaaggctcacctggagcgcctgga
ccacagggacaacctggagagcctggaccacatggtagcgtaggtgtgaagggagagaaa
ggctaccctggaccttctggtttggacatgccggggcttcagggagagaagggagccccc
ggattcccaggacccgccggttccaaaggactgccagggcgaacaggattaccaggcagg
gacgggctgattggaagccaaggtcctaagggtgaaatgggggtcattgggacaccagga
ttaccaggatttcccggaatatctggtacacctggatctcctggtctgagaggtgatcct
ggtaaaactggaccaagaggtgatattggagagcctggacctaaaggagaaaggggagag
ccaggtcttcagggacctccagggaagatgaccgacattgaaatggagcacgtgaaggga
gagaagggagacctcggagacctaggtaaccctggcgtcagtggagagaagggccaccgt
ggcatgtctggagaccccggcatgccaggcaaagatggagagcctggattacctggacaa
ccaggtgagaaaggagaccctggttttcctggagagcctggcggcatgggacaacctgga
cagaagggcaacataggagagatgggaataccaggtgtggtgggtccaaaaggcactaaa
ggagagtttggcacaccgggacatccaggattcagaggcactgatggacagaaaggagac
agaggagcagctggtgatccaggtcttgggatcccgggacatccaggagaaaagggtcag
acaggtcagccagggtttccagggtcaccaggagagaagggtcagaagggtcatgagggt
atgcctggcaaaccaggactgcaaggcctcaaaggagaaaatggaagcatcgggtatcca
ggtcagccaggtagaccaggtgaaaagggtacccctgggctccctgggtctgcaggagtg
cccggtcatgaaggccgtcccggtgaaggtggcttgcagggaccccctggacctcctgga
gagaagggagagcatggagtggacggcatcccaggatcctcaggggagagaggagagcca
ggtttccctggccgaggtttccctgggccacctggagatttcggtggcaaaggtgacaaa
ggtagtcctggcttccctggtactccaggtcaccctggtgtccctggtatcaaaggtgac
aagggacttccaggatcgcagggaccacatggtgagacaggagagaggggacttccaggt
ggctctctcgagggccccaagggagtcaggggagagacaggacaacctggagaaccagga
tccccaggggcaccgggacctgctggtgtgccaggcagagatggaaaaaagggagataga
ggagaacagggtccccctggtttccagggagaggcaggacacaagggtgaccccggaatc
gttggacttcctggacaagatggactcccaggtatcgatggacagaaaggagagagggga
ttacagggtgtcccagggttcccaggtgtaaagggtaactttggggacattggattcaaa
ggagagcttggagacagaggattccctggagaaaaaggtagtgaaggcccccctggtccc
ccagggccccacaccttcattaaaggagacattggcttcccaggaattcaaggtcctcca
ggaccacaggggccatttggtttccctggacagaaaggacagcaaggtttgacaggtatt
tctggaccgaaaggtgaagacggcctccctggataccacggtcagccgggagccaaagga
gagcctggtctgtcaggaccagaaggacccaggggatatccagggcccccaggacctgat
ggtgttccaggtcaagtaggtccacctggcccctcctccatggagcatgggtttctggta
acccgtcacagccaaactgtggaggtgccatattgtcctgagggaacgtcactcatatat
gatggctactccttgctctacgtacaaggcaatgaacgctctcatggacaggacttaggt
acggcaggcagctgtttaagaaagttcagcccaatgcccttcctgttctgtaacatcaac
aacgtgtgcaactttgcttctcgtaacgactactcctactggctcacgtcccccgagccc
atgcccatgagcatggcgcctatcactggtgaaggcatcaaacccttcatcagcaggtgt
gctgtgtgtgaggctccagccatggtgatagcagttcacagtcagtccatcatgatccct
tcatgccctctcggctgggactctctgtggattggctactcttttgtcatgcacaccagt
gctggtgctgagggttcaggtcaggctctggcctctccaggttcctgtctggaggagttc
cgcagcgctccgttcatcgagtgtcacggtcgtggaacctgcaactactacgccaactcc
tacagcttctggctcgccaccattgaagacaatgagatgtttacgaaacccgtcccgacg
acgctaaaagcaggcagtctcagaacacacatcagccgctgtcaggtgtgcatgaagagg
acataa

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