Paralichthys olivaceus (Japanese flounder): 109638949
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Entry
109638949 CDS
T06037
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109638949 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109638949 (cnot1)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109638949 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109638949 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
109638949
NCBI-ProteinID:
XP_019957703
LinkDB
All DBs
Position
Unknown
AA seq
2399 aa
AA seq
DB search
MNLDSLSLALSQISYLADNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLSEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIRDSKGLQIVVYGIQRGLGIEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHNVATDILKAPPEDDNRGIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVPLCMDPLSS
MGSLNLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQL
PGMDSGPLSTGISSGIGSSLGMPTVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLA
LAQVQAQAQSQQPGGPKAPQPGPASTLVTTTTTTTTAAKTTTITRPTPSSFKKDVPPSIN
TTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVS
QYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSL
LKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMV
FRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKS
LEEQLSAPKKEAKPPEELLPVSTTVFCPTGDFVPFAAPPSTPAATTTACTTTGPPTPQFS
YHDINVYALAGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMT
TCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALR
APTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGR
RYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQP
MKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIA
ALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIEC
RDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVS
HVTEADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGIS
QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHGQGILKTDDLITR
FFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTV
TKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT
AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP
FLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP
RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELR
SNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcaaatcagctatctggcggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacaacatattgtaaatcgtcacggt
cctgaggcagacaggcatctattacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctcaactctttgttacgccatagacaatcccctacac
taccagaagagtttgaagccatctgcccatttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttggacttgctttgctcaattccagcaacacagac
cttcgtggctttgctgcacagttcatcaagcagaaacttccagatctcctgcggtcatac
gttgacgctgatctcggaggaaaccaggaaggtggctttcaagacattgccatagaggtc
ttgcacctactgctctcccatctactgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctgaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatccta
ccagactcgggggagttggctaagaccatgatggagagttctctctcagaattcatgcaa
gaagttggctatggcttctgtgcaagtgtggatgagtgcagaaatataatcctccaatat
ggggtgagggaggtgacggccagccaggtagccagggtcctgggcatgatggctcgtaca
cactctggcctaactgatggtatccccctacagtccatctctgctccaggtagtggtatc
tggagtgatggtaaggataagaacgatggttcgcaggcacacacatggaatgttgaggtt
ctcatcgacgttgtcaaagaagttaatcccaacctgaacttcaaagaggtgacgtacgaa
ctggaccacgcaggctttataatccgtgacagtaaaggcctgcaaattgtggtttatggc
attcagaggggattgggaatcgaggtcttccctgtcgatctcatctatcggccatggaaa
cacgcagagggacagctgtcattcattcaacactctctgatgagtccagaagtgttctgt
ttcgctgactacccctgtcacaatgtggccactgacatcctcaaggccccaccagaggat
gacaacagggggattgccacatggaaaagtctggacctggtcgagagcctgctcaggctg
tctgaggtgggccagtacgagcaggtgaagcagttgttcagcttcccaatcaaacactgc
ccagacatgttggtgttggcattactgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctaatgcccatctttctgggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggacagtctccatccatccgtcagttaataatgcat
tcgatggcagagtggtacatgagaggggagcagtatgaccaagccaagttgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgacctcgctgcacttgcctcgcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccttttatccaggcgtgtgtgacattccta
aagaggcgctgcccatccattatgggaggtctggcccctgataaggaccagcccaaaagt
gcccagctcccgccagagaccttagccaccatgctggcctgcctgcagtcctgtgctggg
agtgtgtcccaggagttgtcagagactatcctcaccatggttgccaactgcagcaatgtg
atgaataaagctcggcagccaccaccaggggtgatgcccaagggccgtgcccccagcacc
agcagcctggatgccatctcacctgtacaggtacctttatgtatggaccctctctcaagc
atgggttccttgaacttagggggcacagccacctcacacacccagagcatgcaaggtttc
cccacctcactgagttcagcttttagtaatccccagtccccagctaaggccttcccccca
ctgtccaaccccaaccccagcacaccatttgggggaattggcagtctgtcctcacagctc
cctggtatggactctggtcccctgagcacaggcatcagctctggtattggctctagtctg
gggatgccaacagtaagcactgacccttttggcaccaggaagatgagcacaccaggcttg
aatccacctacctttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcac
tttagcaaggagatagatgatgaagcaaacagttacttccagcgcatctacaaccaccca
cctcacccaaccatgtccgtggatgaagtacttgagatgctgcagaggttcaaggattca
accatcaagcgggagcgagaggtgttcaactgcatgcttcggaacctgtttgaggaatat
cggttcttcccccagtacccagacaaggagctgcacatcactgcctgcctttttggtgga
attatcgagaagggtcttgtcacctacatggcccttggcttagccctccgatatgtcctt
gaagccttaagaaaaccctacggatccaaaatgtattactttggaatagctgccctagat
aggttcaaaaacagactaaaggactatcctcagtattgtcaacacttggcttcaattgcc
cacttcttgcagttcccccaccatttacaagagtgtgtgcagtatatcgagtatggccaa
cagtcacgggaccctccggtgaagatgcaaggctccatcaccacacctggtagtctggca
ctggcacaagttcaagcccaggctcaatcgcagcaacctggtggccctaaagccccacaa
cctggtccggccagcaccctcgtcaccaccacaacgaccacaaccacagcagcaaagacc
accaccataacaagaccaacgcccagcagcttcaagaaggatgtgcctccctccataaac
actaccaacattgacacactgctggtggccactgaccaaaccgaaaggattgtagagcct
ccagagaatgtccaggagaagatagcttttattttcaacaacctgtctcagtccaacatg
acacagaaggtggaagagttgaaagagactgtgaaggatgagtttatgccctgggtgtct
cagtaccttgtgatgaagcgtgtcagcatagagcccaacttccacagtctgtactccaac
tttctggacactctcaagaacccagagtttgtcaagatggtcctcaatgagacttacagg
aacatcaaggtgctcttgacctcggacaaggcagctgccaatttctctgatcgctccctg
ctgaagaatctgggccactggttggggatgattacactggctaaaaacaagcctatcctc
tatacagatctggaagtcaagtctctgcttctagaagcctatgtgaaaggccagcaggaa
ttactttatgtggttccctttgtggccaaggttttggaatctagtctgcggagcatggtt
ttcaggccccagaatccctggactatggccatcatgaatgtccttgctgagcttcatcag
gaacatgacctcaagcttaacttaaagtttgagattgaagttctgtgtaagaacttgtct
ctggacataaatgacctgaagccaggaaacctcctgaaggacaaggagaagctgaagagt
ctagaggaacaactttctgcaccaaagaaggaggcaaaacccccagaagagttgctacca
gtctctaccacagttttttgtccaacaggagactttgtcccattcgcagctcctccctca
accccagctgccaccaccaccgcctgcacaaccactgggcccccaaccccacagttcagt
taccatgacatcaatgtgtatgccttggctggcctggctccacacatcaatataaatgtc
aatatccctctgctacaggcccatcctcagttgaagcagtgtgtacggcaatcagtagag
cgagccgtccaggagctagtgcatcctgtggttgatcgctccattaaaattgctatgaca
acctgtgagcagatcatcaggaaggactttgccctggattcagaggagtcccgcatgcgt
gtcgctgcccatcatatgatgagaaacctgaccgctggcatggccatgatcacctgccgt
gagccgctgctcatgagcatcgccaccaacctgaagaacagttttgctgctgctcttagg
gcaccaaccccacaacaaagggaaatgatggaagaggctgctgctcggattgctcaagac
aactgtgaattagcttgttgcttcattcagaaaacagctgtggagaaggctggtcctgaa
atggacaagagactggccacggagtttgagctgaggaagcatgcacgtcaggagggacgg
cgttattgtgatcctgttgtcctgacttaccaagctgaacgtatgcctgagcagataaga
ctcaaggtaggaggagtggacccgaagcaactggctgtatatgaggagtttgccagaaat
gttcccggtttcttgcccagtaatgatctctcacaacccactggcttcctggctcagccc
atgaagcaacaggcatgggccacagatgatgtggctcagatctacgataagtgcatggca
gacttggagcaacatcttcatgccattccccctgcccttgccatgaaccccttgacccag
gccctgcgcagcctgctggaggctgtggctttggcacgtaactccagggacggcatcgct
gcacttggcctcctgcagaaggctgtggaaggtcttcttgatgccactagtggagctgat
gctgacttgctgcttcgctacagagagtgccacttgctggtgctcaaagccctgcaggat
ggacgtgcctatggaccacagtggtgcaataagcagatcaccaggtgtctgatagaatgc
cgtgatgagtacaaatacaacgtagaggccgttgagcttctgatcagaaaccatcttgtg
aatatgcagcagtatgacttgcacctggcacagtcaatggaaaatggattgcactacatg
gcagttgcattcgccatgcagttggtgaagctgctgcttgtggatgaacgcagtgtcagc
catgtcacagaggccgacctctttcacaccattgagactttgatgaggacctgtgcacac
tccagagccaacgcacccgagggtcttccccagctcatggatgttgttcgctccaactat
gaagccatgattgaccgggcccacggtggacccaactttatgatgcactctgggatttca
caggcttcagaatacgacgatcccccaggcctgagggagaaagcagagtacctcttgagg
gaatgggtgaacctgtatcactcagctgctgccggcagggacagtaccaaagcattctct
gcctttgttggacagatgcacggacaggggatcttaaagacagatgatctgatcacaagg
ttcttccggctgtgcacagaaatgtgtgtggagatcagctatcgggcacaagctgagcag
cagcacaacccagcagccagcgcagctattatcagagcaaagtgttaccacaacctggat
gcctttgttaggctcatagccctgctggtcaaacactctggagaggccaccaacacagtg
acaaagatcaacctcctcaacaaggtgctgggtatcgttgttggggtgttgatccaggac
catgatgtccgtcagacagaattccaacagctgccataccaccgcattttcatcatgctg
ctgttggagctcaatgctcctgaacacgtcttggagaccatcaacttccagacactcact
gccttctgcaataccttccacatcctgagacccaccaaagcacctggctttgtgtacgcc
tggctggaactcatctcccatcgcatcttcattgccaggatgctcgcgcacacaccacag
cagaagggttggcccatgtacgcacagctgctgattgatctcttcaagtacctggcccct
ttcctgaggaatgtagaactcaacaaacctatgcaaatcctctacaagggtacactgcga
gtgctcctggtcctgctgcatgatttcccagagttcctgtgtgactatcactacggcttc
tgtgatgttattccacccaactgcatccagctccgcaacctcatcctcagtgccttccca
cgcaacatgaggctcccggatccgttcacacccaatctcaaggtggacatgctgagtgag
atcaacatcgctccccgtatcctcaccaacttcacaggcgtcatgccttcgcagttcaag
aaggacctggactcgtatctgaagacacgatcaccagtcactttcctttcagagctgcgc
agcaacctgcaggtgtccaatgagccgggaaatcgctacaacatccagctgatcaatgct
ctcgtgctgtacgtaggcacacaggccatcgctcacatccacaacaagggcagcacaccc
tccatgagcaccatcactcactctgcacacatggacatcttccagaacctggccgtggac
ctggacactgaggggcgttacctgttcttgaacgcgatcgcaaatcagctgcgttacccc
aacagtcacactcactacttcagctgcaccatgctctatctgtttgctgaagccaacaca
gaggccatccaagagcagatcaccagggttctgttggagaggctgattgtgaacaggcct
cacccatggggtctcctcatcaccttcatcgagctgatcaagaatcctgccttcaagttc
tggagccacgactttgtgcactgtgcccctgagattgaaaagctgttccagtctgtagct
cagtgctgcatgggacagaagcaggcccagcaggtgatggaaggcaccggtgccagctag
DBGET
integrated database retrieval system
