Paralichthys olivaceus (Japanese flounder): 109643189
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Entry
109643189 CDS
T06037
Symbol
col6a6
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04510
Focal adhesion
pov04512
ECM-receptor interaction
pov04518
Integrin signaling
pov04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109643189 (col6a6)
04518 Integrin signaling
109643189 (col6a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109643189 (col6a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109643189 (col6a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pov04147
]
109643189 (col6a6)
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109643189 (col6a6)
Exosome [BR:
pov04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109643189 (col6a6)
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109643189 (col6a6)
Hyaluronan
Extracellular matrix or blood plasma proteins
109643189 (col6a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
vWA_SIBA-E
C19orf12
Motif
Other DBs
NCBI-GeneID:
109643189
NCBI-ProteinID:
XP_019963783
LinkDB
All DBs
Position
Unknown
AA seq
2082 aa
AA seq
DB search
MTCGHDAESAPRWFHRQTWGPHEAPRGGSSESLSLPSCRSVFEPEPGRGKPESHSANMEG
RRRLLLGLIIAACFYGNTAQRTVCTQEAVADIIFMVDGSWSIGTLNFEQIRQFLYTLVNS
FDVGSDHVRIGLVQYSTTPRTEFLLNTYQDKADILKHISKLPYMGGGTQTGQGLDFMMKE
HFVERAGSRANQKVPQIAVVITDGKSQDNVESHAQDLKRKGIVLYAIGIKDADEDQLKEI
ANEPHSQHVYSVSDFTALQGISQSIVQTLCTTVEEAKRQLLQLSQDCAKATVADVVFLVD
GSSSIGIPNFQEGQRFIRSVAEGLDIGRDKVRVGLAQYSDEPHQEFLLKDHMDKQSLLNA
IDAFPYRAGGTQTGKAINFLIDTYFTEVAGSRAAQRVPQIAVIITDGDSTDDVIEPAKRL
RKHGVIVFAIGVGNANINELQSIASRPTERFQFTIHSYQALAALKEVLLQTVCVSMEDRR
QALAERFSDIFFLVDSSLSQAEFQQIRNLLNRLINQLKVGESAYRFGLAQYAQDTKVEFY
LNTFQTKAETLAAVKRFRLRPLKPKEPCNLGGALQNASTQFFTVEAGGRAEQGYQQYLVV
IGGKKSNDPVYKQSRQVKAEGVTVVGMSFTPSTDMRVIATAPYVYDSISNAVPVLRALFE
KQDQEATPTGDCKAAKFADIVFIVDVSWSIGTSNFQLVRTFLHSIVSGFEVSESKVRVGI
VSYSDKPKANIYLDTFDNKEELLNFIKILPYNGGNTKTGAALNYTRDNVFIEARGSRIGS
GVQQVAVVITDGESQDNVSRAAAYLRRAGVTVYSVGVQNANRAELAEMASHPANKHVFIV
DSFVKLKSLEQNLQKVLCVNILRQAVSVQTRRTDIKEGCVQTDEADIFFLIDHSGSIWPS
DFNDMKKFIIEFLKTFRIGPDHVRVGVAKYADSPNLEFDLTTHMDASTLEKAVEGIKQIG
GGTETGKALKFMSSHFDRAETTRGHKVPEYLVVITDGKSADEVKVPASELKAQGIIIYAI
GVKSADQEELLEIASDSKKMFFVNNFDALKPIKDEIITDICSPNACKGRPSDLLFLIDSS
GSIDYQDYNKMKGFMKSVIDKSIIAQNEVHVGVMQFSTSPILVFPLNRHYSKEDLSKAID
DMTQLGGGTHTGEAITDVSQYFDASRGGRPDLSQRLVVITDGEAQDLVKGPAEALRAKGV
IIYAIGVMNANTTQLLEISGSKDKVYAEQNFDALQELESQVAMELCDPSRECKKTERADI
IFLVDGSTSINETEFKSMQRFMESMVNQSTVGKNLTRFGVIIFSNEPECNFTLKQYSSKR
EVRQAIEALKSPNGDTYTGKALKYSLPFFDAEHGGRAALQVPQILMVITDGDATDRYTLV
APSEALRDKGISVFSIGVKGANITQLEIMAGHDKSRVFFVDKFEALETLFNNVTEVLCNA
TKPVCEKEKADLVFLVDQSSSISREDYTIMKNFTIELVNSFKVGEDLVRVGLAQFSSRLQ
DEFYLNQFYSEQSVTKHILDMQKSDGGTNIGLALDSIREYFEASRGSRISAGISQNLVLI
TDGESQDDVVGAAQRLRALGIEIFAVGIGNAHDQELVQITGSPERRFNVKNFGSLETIKQ
KVVNTICKSKPGDTPEKGCTIDIAMGFDISSRTGAPGGKLVSGHTKLEAFLPVIGRYVSS
VSGLCCVGTSPIKTKIAFRVVSPDGRFLYDSNFDVHREDVVNKVMAVNLTEPTRFNTALL
KSFGEKFSDQSRAEVKVLVIFSDGLDEDEMKLKHESELLRKSGISALLVVALEGVRDSAQ
LQMVEFGRGFGYNLPLSIGMQSVGSAILKQIDTVSDRECCNVMCKCLGHEGIRGSRGPPG
SKGSSGQKGYPGFPGEEGVAGERGGPGPSGPQGMQGCSGLRGPKGYRGLRGNRGENGEDG
LDGVNGEQGLTGNKGDPGERGDPGNPGIPGIRGEAGLKGQRGLRGDPGESGADNTTPGSK
GEPGNPGLPGSPGEDGNSGESGIVGNLGPDGRRGPPGEKGASGRPGDAGVPGSPGASGPQ
GSRGVRGQPGPRGGAGLPGPQGGPGVAGAPGSVGRRGANGQK
NT seq
6246 nt
NT seq
+upstream
nt +downstream
nt
atgacctgtggccacgatgctgaatctgctccaagatggttccaccgacagacgtggggg
ccccacgaggccccgagggggggatcttctgagtctctgagcctcccgtcctgccgaagt
gtctttgagcctgaaccaggaagagggaaacccgagagccattcagccaacatggagggg
aggcggcgtcttctcctcggcctcatcatagcagcgtgtttctatggtaacactgctcag
agaacagtctgcacacaagaggccgtagctgacatcatcttcatggtggacgggtcgtgg
agcatcggtaccctgaacttcgagcagatccgtcagtttctttacacgctggtcaacagc
ttcgatgtcgggtctgaccacgttcgcattggcttggtccagtacagcaccacacctcgc
accgagttcctactgaacacctatcaggacaaggcagacatcctcaagcacatcagcaag
ttaccttacatggggggcggcacccagacaggacagggcttggactttatgatgaaagag
cactttgtggagagagccgggagccgggctaaccagaaggtgccgcagatcgctgtggtg
atcactgacggcaaatcacaagacaatgtagagtcccacgcccaagatctgaagcgtaag
ggaatagttttatatgcaatcggtatcaaagatgcagacgaagaccaactgaaagagata
gcgaatgagccgcacagccagcatgtctacagcgtgtctgacttcactgctctgcaggga
atttctcagagcattgtccagacgctgtgcacgaccgtggaagaagccaaacgacaactc
ctgcaattgtctcaagactgtgccaaagctactgtggccgacgtcgttttcctcgtcgac
ggctcctccagcatcggcatccctaactttcaggagggtcagagatttattcgcagtgtt
gccgaaggtctggacattggccgtgacaaagttcgggttggcttggcacagtatagtgat
gaacctcaccaggagttcctgctgaaggatcacatggacaagcaatccctgcttaatgca
atagacgcatttccctaccgagcaggcggcactcaaaccggcaaggccatcaacttcctc
attgacacgtactttacagaagtggccgggagccgcgccgcacaacgagtgcctcagatc
gctgtgatcatcacagatggggactccacagatgatgtgatagagccggccaagcgcctg
cggaagcacggggtgattgttttcgccatcggggtcggaaatgccaacataaatgagctt
cagtccatcgccagcagacctacagagcgcttccaattcaccatccatagttaccaagct
ctcgcggcgctgaaagaggtcctactgcaaactgtttgtgtctccatggaggatcggaga
caagcgttggcagaaaggttttcagacattttcttcctcgtggacagcagcttaagtcaa
gcagagtttcagcagatcaggaacctcctcaaccgactgatcaatcaacttaaagtcgga
gaatctgcctaccgttttggcttggctcagtatgctcaagataccaaggtagaattttat
ctcaacactttccaaaccaaggcggagaccctggccgctgttaagcgtttccgcctgcgt
ccactgaaacctaaagagccgtgtaacctgggcggtgcactgcagaatgcaagcactcag
tttttcaccgttgaagcaggaggtcgtgcagagcaaggataccaacagtatctggttgtt
attggtggaaagaagtcaaatgatcctgtgtataagcagtctcgtcaggtcaaagcagaa
ggagtaactgtggtcgggatgagtttcactccatcgacagatatgcgtgtcatagccacg
gcaccatatgtctacgattctatcagcaatgctgtacctgtactgagagctctctttgaa
aaacaggaccaggaagcaactcctactggagattgcaaagcagcaaaatttgccgacatc
gttttcattgttgatgtgtcctggagcatcggaacttccaacttccaacttgtccgcact
ttcctccactcaattgtgagtgggtttgaagtcagtgaatccaaagtcagagttggcatc
gtgtcttacagtgacaagcccaaagcaaacatctacctcgacaccttcgataacaaggag
gaactgctgaacttcatcaaaattctgccgtacaatggaggtaatacaaagactggagcg
gcactaaattacacacgagacaatgtctttatcgaggcgagaggaagcaggatagggagt
ggcgttcagcaggtggcggtcgtgatcactgatggggaatcccaggacaatgtgagcaga
gcagcagcttacctccgtcgggctggagtcactgtttactctgttggagtccaaaatgcc
aaccgggccgagctggcagagatggcgtctcatcccgccaataagcatgtgtttattgtt
gacagttttgtcaaactgaaatctctggaacagaacctgcagaaagttctttgtgttaac
attctacgtcaagccgtctccgtccaaacaagaagaactgatatcaaagaagggtgtgta
caaacagatgaagcagatatcttcttcctgattgatcactcaggaagtatttggccctca
gacttcaatgacatgaagaagttcatcatagagtttcttaaaaccttccgcattggccca
gatcatgtccgtgtaggagtggcaaaatatgcagattcaccaaacttagagtttgatctg
acaactcacatggatgccagcacattggagaaagcagtggagggaatcaaacaaatagga
ggcgggacagagacaggaaaagcattgaaattcatgagctcacattttgacagagcggag
accacccgaggacacaaagtccctgagtacctggtggtcatcactgatggaaaatctgct
gatgaggtcaaggttccggcgagtgaactgaaggctcagggcatcataatctatgccatc
ggggtgaaaagtgcagatcaagaggagctgcttgagattgccagtgattcaaagaagatg
ttctttgtcaataattttgatgccctaaagccaatcaaggatgaaatcatcacagacatc
tgttctccaaatgcttgcaaaggcagaccaagcgacctcctctttttgattgacagctca
gggagcatcgattaccaggactacaataaaatgaaaggcttcatgaaatctgtcattgac
aagtccataatcgcgcagaacgaggtgcatgttggtgtcatgcagttcagcacaagccca
atacttgtgttcccgctcaaccgccactacagcaaagaggacctgtccaaagccattgat
gatatgacgcagcttggtggaggcacacacacgggtgaagccatcacagatgtgtcgcag
tattttgatgcaagcagaggaggccgtcctgatttgagccagaggctggtggtgataaca
gatggtgaggcccaagatctggtcaaaggacccgcagaggctctgagagccaagggagtg
attatctatgccattggagttatgaatgctaacaccacccaactgctggagatcagcggt
tcaaaagacaaggtatatgctgagcagaactttgacgcattgcaggagttggagagccag
gtggctatggagctctgtgatccatcgagagagtgtaagaagacagagagggctgatatc
attttcctggtggatggttccacaagcataaacgagacagagtttaaaagcatgcagagg
tttatggagtcaatggtgaatcaatccacagttggtaaaaacctgactcgcttcggggtc
attatcttctccaacgaacccgaatgcaatttcactctgaagcagtacagctccaagcga
gaggtccgtcaagcaattgaagcactgaagtccccaaatggagacacctacactggaaaa
gccttaaaatattctttaccattctttgatgctgaacatggtggtcgagctgctctccag
gtgcctcagattctcatggtgatcacagatggcgacgctactgaccgttataccctggtc
gcaccatcagaggcactgcgagacaaagggatcagcgtcttcagtatcggcgttaaggga
gcgaacatcactcagctagagatcatggctggtcatgacaagtccagagttttctttgtg
gacaaatttgaagccctggaaactctgttcaacaatgttactgaagttctctgcaatgcc
accaagccagtttgtgaaaaagagaaggctgacctggtcttccttgttgaccagtcttcc
agcatcagcagggaggattacaccatcatgaagaatttcacaattgagttagtgaacagc
tttaaagtcggtgaagatttggtgcgtgtgggactagcccagttcagtagcagattacag
gatgagttttacctcaaccagttctactctgaacaatcagtgaccaagcacatcctggat
atgcagaagagtgatggaggaaccaacattggactggccttggattccatcagggaatat
tttgaagcatcacggggaagtcgtatatctgccgggatctcccagaatctggtgctgatc
acagatggcgaatcacaggatgatgtggtaggtgcagcccaacgtctcagggctctgggg
attgagatctttgccgtcggcatcggaaatgcccatgaccaggagctcgtgcagattact
ggcagcccagagaggcgctttaatgtgaagaactttggtagcttggagacgatcaaacaa
aaagtggtgaacaccatctgcaaatccaaacccggcgacacacccgagaagggctgcacc
atcgatatcgccatgggatttgatatttctagcagaactggagctcctggtggaaagctc
gtcagcggccacaccaagctcgaggctttcttaccagttattggccgttacgtttcttca
gtatcaggcctatgctgcgtcggcacctcacctattaagaccaaaatcgccttccgagtg
gtgagtcctgatgggcgcttcctgtacgactccaactttgatgtccaccgtgaagacgtg
gtgaataaagtcatggctgtgaatttgacggaacctactcgtttcaacaccgccctgctg
aaatcctttggggaaaagttcagtgaccagtccagagctgaagtgaaggtgctggtgatc
ttctctgacggacttgatgaagacgagatgaagctgaagcatgaatcagagctgctgcga
aagtctggcatcagcgctctgctggtcgtggctctggagggagtgcgtgactccgcccag
ttgcagatggtcgagttcggccgaggattcggctacaaccttcctctgagcatcggcatg
cagagtgtgggcagtgccatcctcaaacagattgacaccgtgtcggacagggagtgctgc
aacgtcatgtgcaaatgtttgggacacgaaggcatccgaggctctcgggggcccccgggg
tcaaagggttcgtctggacagaagggttatcccggcttcccaggagaggagggcgtcgct
ggcgagcgagggggtcccgggccgagcggaccgcagggtatgcagggatgctctgggctc
agaggaccaaagggctacagaggcctccgggggaacaggggtgaaaacggcgaggacgga
ctggacggagtcaacggagaacagggtctgacgggaaataaaggagacccaggagagaga
ggagacccaggaaacccaggtatcccaggtatcagaggagaggcggggctaaaaggacag
cgagggcttagaggagatccgggtgaatcaggcgctgacaacacaacaccaggatccaaa
ggggaacccggcaacccgggtttaccgggatcacctggagaggacggaaattccggtgag
agcggaatagttggaaacctgggcccagatggaaggagagggccgcctggtgagaagggg
gcctctggtcggccaggagatgcaggagtcccaggcagccccggagcttctggtccacag
ggttcccgaggggtcagaggtcaacctgggccgagaggaggcgctggacttcccggaccc
cagggaggaccgggagtggctggagcgccgggatccgtggggcggcgtggagctaacgga
cagaag
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integrated database retrieval system
