Pontivivens ytuae: I0K15_11605
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Entry
I0K15_11605 CDS
T06919
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
poz
Pontivivens ytuae
Pathway
poz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I0K15_11605 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poz03021
]
I0K15_11605 (rpoB)
03400 DNA repair and recombination proteins [BR:
poz03400
]
I0K15_11605 (rpoB)
Enzymes [BR:
poz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I0K15_11605 (rpoB)
Transcription machinery [BR:
poz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I0K15_11605 (rpoB)
DNA repair and recombination proteins [BR:
poz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I0K15_11605 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
KorB
Motif
Other DBs
NCBI-ProteinID:
QPH52470
UniProt:
A0A7S9LPQ2
LinkDB
All DBs
Position
2385591..2389697
Genome browser
AA seq
1368 aa
AA seq
DB search
MVQTFSGHKRVRRFYGKIREVAKMPNLIEVQKSSYDLFLDSGDGPEPMDGEGLMGVFQSV
FPIKDFNETSILEFVKYELEDPKYDVEECQQRDMTYAAPLKVTLRLIVFEVDEDTGARSV
KDIKEQDVYMGDLPLMTENGTFIVNGTERVIVSQMHRSPGVFFDHDRGKTHASGKLLFAS
RIIPYRGSWLDFEFDAKDIVHARIDRRRKLPVTTLLYALGLDQDGIMDAYYDTVTYRSVK
DKGWATPFFPERIRGTKPTYDIVNAADGELIAEAGKKVTPRTVKKLLDEGSVKEILVPYD
SIFGRFVASDMVNPKTGHIYAEAGDEITEELLSELHEAGYEEIPTLDIDHVNVGPYIRNT
MAADKNMNRDTALLDIYRVMRPGEPPTVEAASTMFDSMFFDSERYDLSAVGRVKMNMRLD
LDAPDTMRTLRKEDIIAVVKALVELRDGQGEIDDIDHLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLASFARVNKYGFIETP
YRKVEDGKVTDEVQYMSATEEMRYTVAQANAKLSADGTFENELVSTRKAGEFELNPPENI
NLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGIEEVVAR
DSGAAITAKREGIVDQVDAMRIVIRATGDLLPGDPGVDIYRLRKFQRSNQNTCINQRPLV
KVGDRVRQGEVVADGPSTDLGELALGKNVLVAFMPWNGYNYEDSILISERIVKDDVFTSI
HLEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDYGTVVEVRVFNRHGVDKDERALQIERE
EVERLQRDKDDELAILERNIYARLRDLITGKKAVKGPKGVKAGSTIDDEMLDDTLTKGLW
WQLALEDEEDAKAVEALQAQFEAQKRTLDRRFDDKVDKVRRGDDLPPGVMKMVKVFIAVK
RKLQPGDKMAGRHGNKGVISRVVPEEDMPFLADGTQVDFVLNPLGVPSRMNVGQILETHM
GWAARGLGQMVGEALDEYRRSGDMTPVKDAMKLAYGDDIYADATADMTDEEFLEAAGNVT
AGVPIATPVFDGAKEPDVNDALKRAGLDESGQSVVYDGRTGEQFARPVTVGVKYLLKLHH
LVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
VAGRTKVYEAIVKGENDFEAGVPESFNVLVKEIRSLGLNVELLDSETE
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggtacagacgttttccggtcacaagcgggtccggcgcttttatggcaagatccgtgaa
gtcgcgaaaatgccgaacctcatcgaggttcagaaatcctcctacgatctcttcctggat
agcggcgatggtcccgagccgatggacggcgagggcctcatgggcgtgttccagtccgtc
tttccgatcaaggacttcaacgagacgtcgatcctggaattcgtgaaatacgagctggag
gacccgaaatacgacgtcgaggagtgccagcagcgcgacatgacctatgccgccccgctg
aaggtcaccctgcgcctgatcgtgttcgaggtggacgaggacacgggtgcccgctcggtc
aaggacatcaaggagcaggacgtctacatgggcgacctgccgctgatgacggaaaacggc
acgttcatcgtgaacggcaccgagcgcgtcatcgtgtcgcagatgcaccgctcccccggt
gtcttcttcgaccatgaccggggcaagacccatgcctcgggcaagctgctcttcgcctcc
cgcatcattccctatcgcggctcgtggctcgatttcgagttcgacgcgaaggatatcgtg
cacgcgcggatcgaccgtcgccggaagttgccggtgaccacgctgctctatgcgctcggc
ctcgatcaggacgggatcatggacgcgtattacgacacggtcacgtaccgttccgtgaag
gacaagggttgggcgaccccgttcttccccgagcggatccgcggcaccaagccgacctat
gacatcgtgaacgccgccgatggcgagctgatcgccgaggcgggcaagaaggtgacgccg
cgcacggtcaagaagctgctcgacgagggctccgtgaaggagatcctggttccctatgac
agcatcttcggccgcttcgtcgcctccgacatggtgaacccgaagaccggtcacatctat
gccgaggccggcgacgagattaccgaggagctgctctccgaactgcacgaggccggttac
gaggagatcccgaccctcgacatcgaccacgtgaatgtcggtccgtacatccgcaacacg
atggccgcggacaagaacatgaaccgcgacaccgcgctgctcgacatctaccgggtcatg
cgcccgggcgagccgccgaccgtggaagcggcctcgaccatgttcgactccatgttcttc
gacagcgagcgctacgacctctctgcggtgggccgggtgaagatgaacatgcgcctcgac
ctcgatgcgccggacaccatgcgcaccctgcgcaaggaggacatcatcgccgtcgtcaag
gcgctggtggagctacgtgacggccagggcgagatcgacgatatcgaccacctcggcaac
cgtcgtgtgcgctcggtcggcgagctgatggagaaccagtaccgcgtgggtctcctgcgc
atggagcgtgcgatcaaggagcggatgtcctccgtcgagatcgacacggtgatgccgcag
gacctgatcaacgcgaagccggcggcggcggcggtgcgcgagttcttcggctcgtcccag
ctcagccagttcatggaccagaccaacccgctcagcgaagtgacgcacaagcggcgcctc
tcggccctcggcccgggcggtctgacccgcgagcgtgcgggcttcgaggtgcgcgacgtg
cacccgacgcattacggccgcatgtgcccgattgagacgccggaaggcccgaatatcggc
ctgatcaactcgctggcctcgttcgcgcgcgtgaacaagtacggcttcatcgagaccccg
tatcgcaaggtcgaggacggcaaggtcacggacgaggtccagtacatgtccgcgacggag
gagatgcgctacacggtcgcccaggcgaacgccaagctctccgccgacggcacgttcgag
aacgagctggtctccacccggaaggccggtgaatttgagctgaacccgcccgagaacatc
aacctgatcgacgtgagccccaagcagctcgtgtccgtcgcggcctcgctgatcccgttc
ctggagaacgacgacgcgaaccgcgcgctgatgggctcgaacatgcaacggcaggcggtg
ccgctggtgaaggccgaagcgccgttcgtcggcacgggcatcgaggaggtcgtggcccgg
gattccggtgcggcgatcaccgcgaagcgtgaaggcatcgtcgaccaggtggacgcgatg
cggatcgtgatccgggccaccggcgacctgctgccgggcgacccgggcgtggacatctac
cgcctgcggaagttccagcgctccaaccagaacacctgtatcaaccagcgcccgctggtg
aaggtgggcgatcgcgtccgtcagggtgaggtcgtggccgatggtccgtccaccgatctg
ggcgaactggcgctcggcaagaacgtgctcgtcgcgttcatgccgtggaacggctacaac
tacgaggactccatcctcatctccgagcggatcgtgaaggacgacgtattcacctcgatc
cacctggaggagttcgaggtcgccgcgcgcgacaccaagctcgggccggaggagatcacg
cgggacatcccgaacgtcggcgaggaggcgctgcgcaacctcgacgaggcgggcatcgtc
tatatcggcgccgaagttgggccgggcgacatcctcgtgggcaagatcaccccgaagggc
gagagcccgatgacgccggaggagaaactgctccgcgccatcttcggtgagaaggcctcg
gatgtgcgcgacacctccctgcgtctgccgccgggcgactacggtaccgtagtcgaggtc
cgcgtcttcaaccgccacggcgtcgacaaggacgagcgtgcgctgcagatcgagcgcgag
gaagtcgagcgcctgcagcgggacaaggatgacgagctcgccatcctcgagcgcaacatt
tacgcccgcctgcgggacctcatcaccggcaagaaggcggtgaagggtccgaagggcgtg
aaggccggctcgaccatcgacgacgagatgctggacgataccctgaccaagggcctctgg
tggcagctcgcgctggaggacgaggaggacgcgaaggccgtggaggcgctgcaggcgcag
ttcgaggcccagaagcgcaccctcgaccgccggttcgacgacaaggtcgacaaggtccgc
cgcggcgacgacctgccgccgggcgtgatgaagatggtcaaggtcttcatcgcggtgaag
cgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcgtcatctcc
cgcgtggtgccggaggaggacatgccgttcctcgccgacgggacgcaggtggacttcgtg
ctgaacccgctcggcgtgccctcgcgcatgaacgtgggccagatcctcgagacgcacatg
ggctgggccgcgcgcggcctcggccagatggtcggcgaggcgctggacgagtatcgccgc
tcgggcgacatgacgccggtcaaggacgcgatgaagctcgcctatggcgacgacatctat
gcggacgcgaccgccgacatgacggacgaggagttcctggaggccgcgggcaacgtgacc
gccggtgttcccatcgcgacgccggtcttcgacggcgcgaaggagcccgacgtgaacgac
gcgctcaagcgcgcgggtctcgacgagagcggtcagtcggtcgtctatgacggccgcacg
ggtgagcagttcgcgcgcccggtgacggtgggtgtgaagtacctgctgaagctgcaccac
cttgtggacgacaagatccacgcgcgttcgaccggcccgtactcgctcgtcacccagcag
ccgctgggcggcaaggcgcagttcggcggccagcgcttcggggagatggaggtctgggcg
ctcgaagcctacggcgccgcctacaccctgcaggagatgctgacggtgaagtcggacgac
gttgcgggccggaccaaggtctacgaggccatcgtcaagggcgagaacgacttcgaggcc
ggcgtgccggaatcgttcaacgttctggtcaaggaaatccgctcgctcggcctcaacgtc
gagctgctggattctgaaacggagtga
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