Komagataella phaffii: PAS_chr2-2_0041
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Entry
PAS_chr2-2_0041 CDS
T01092
Name
(RefSeq) Serine/threonine protein kinase, subunit of the transcription factor TFIIH
KO
K02202
cyclin-dependent kinase 7 [EC:
2.7.11.22
2.7.11.23
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03022
Basal transcription factors
ppa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAS_chr2-2_0041
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr2-2_0041
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ppa01001
]
PAS_chr2-2_0041
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr2-2_0041
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr2-2_0041
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr2-2_0041
Enzymes [BR:
ppa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.22 cyclin-dependent kinase
PAS_chr2-2_0041
2.7.11.23 [RNA-polymerase]-subunit kinase
PAS_chr2-2_0041
Protein kinases [BR:
ppa01001
]
Serine/threonine kinases: CMGC group
CDK family
PAS_chr2-2_0041
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PAS_chr2-2_0041
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Capping factors
PAS_chr2-2_0041
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PAS_chr2-2_0041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
ABC1
Kinase-like
Seadorna_VP7
RIO1
APH
Pkinase_fungal
Motif
Other DBs
NCBI-GeneID:
8199146
NCBI-ProteinID:
XP_002492173
UniProt:
C4R319
LinkDB
All DBs
Position
2:2308174..2309133
Genome browser
AA seq
319 aa
AA seq
DB search
MTISYTKEKKVGEGTYAVVYLGKQLPSERNIAVKEIKVGTFKDGVDMSAIREVKYLQELK
HQNVIELVDVFDEEGNINLVLEFLPMDLEIIIKDTSLLFQPGDVKSWMLMTLRGLHHCHR
NFILHRDLKPNNLLISPDGELKIADFGLARSLSQPNERLTSNVVTRWYRAPELLFGARHY
TEVIDVWAVGIIFAELMLRTPYLPGKDDADQLTVTFQALGTPTDKTWPGVSTLPLYKSLH
VYPEPSRAELLNRFGAASEEALNLMIAMTRMDPNKRCSTEEALTCKYFTEYPPPTKPINL
PMKTQKKRESEEDYESNKR
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgactatatcctataccaaggagaaaaaggttggtgaaggtacctatgccgtagtatat
cttggtaaacagttgccatcggagagaaatattgccgttaaggaaataaaggttggtact
ttcaaggacggagtagatatgtctgcaatcagagaagtcaaataccttcaagaactaaaa
catcagaacgtaatagaattggttgatgtatttgatgaagaagggaatataaacctggtt
ttggaattcctgcccatggatttggaaataataatcaaagacacctccctgttgtttcaa
ccgggagatgtgaaatcttggatgttgatgaccttgaggggcttgcatcactgtcaccga
aatttcattctacacagagatttgaagcccaataacctactcataagcccagatggggag
ttgaagattgcagattttggtttggcaaggtcattaagccagcctaacgagaggctcacc
agtaatgtggtaactaggtggtatagggcaccagagctattgttcggagctagacattat
actgaagtcatcgatgtctgggctgtaggtatcatttttgctgaactcatgttgaggacc
ccttatctaccaggaaaagacgatgctgatcagttgacagtaacatttcaggcattaggt
actccaacagataaaacgtggccaggagtttccacgttgcccctctacaaatccctacac
gtgtaccccgagccctcaagagcagaactactcaaccgcttcggagcagcttcagaggaa
gcgttaaatttgatgatagctatgactaggatggatcctaacaagcgttgttccacagag
gaagctttgacttgtaaatactttacggaatatccacctccaacaaagcctataaatctc
cccatgaaaacccagaaaaaacgagagtcggaagaagattacgaaagtaataagcgttga
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