Komagataella phaffii: PAS_chr3_1077
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Entry
PAS_chr3_1077 CDS
T01092
Name
(RefSeq) Component of the U4/U6-U5 snRNP complex, involved in the second catalytic step of splicing
KO
K12856
pre-mRNA-processing factor 8
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr3_1077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr3_1077
Spliceosome [BR:
ppa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PAS_chr3_1077
Complex C
U5 SnRNP specific factors
PAS_chr3_1077
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
8199689
NCBI-ProteinID:
XP_002493321
UniProt:
C4R6F6
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All DBs
Position
3:complement(2075877..2083160)
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AA seq
2427 aa
AA seq
DB search
MSNPTFPFSSHSVLSNTEKKQAQSNDKRSISPPPPPPGNKRQRSLQTRPPPPPPPLGPKI
SSNRPFSGSESMRSMRPPPPPPPSRPSIANSSTVPVKDSGSKNRVLDGRKRRWLQLQKLR
YANTTGITKKAFVHPTKIEMPPEHLRKIINDHGDLSSKRFDKDKRAYLGSLKYLPHAILK
LLENMPQPWEETKQVKVLYHTTGAITFVNEIPRVVEPIYTSQWATTWLMMRREKRDRKHF
KRMRFPPFDDDEPPVDWGENIQGVAPLDSIQIDLDEVDDKAVIEWFYDSSRPLADDPAIM
NGDSYRTWRLNLSQMHNLYRLSTSLLSEIINPNYYYLFDRESFFTAKALNIAIPGGPKFE
PLYKDLVNLEDEDFSEFNSVDRIIFRQPIRTEYRVAFPFLFNSYTRSVHVSAHSYPMFCY
TRVDDPNLPAFHFAELFSPISPNLLESVEVEKQVFDLETGEDLAPDFVLPQDFSFLLNDE
NIEQEETKDAIQLWWAPYPYNRRSGKTVRAQDVPLVKSWYLQHPPADYPAKVRISYQKLL
KNNVKNELHSATQSNKTRNIALLKSLKSTKYFQQTSIDWVEAGLQVVRQGFNILNLLIHR
KGLTYLHLDYNFNLKPTKTLSTKERKRSRFGHAFHLMREILRVTKLIVDAHVQYRIGNVD
AFQLADGIYYILNHLGQLTGIYRYKYKVMHQIRACKDLKHVVYYRFNKIIGKGPGCGFWQ
PAWRVWLFFMRGIIPLLERWLGNLLARQFEGRQSKGVAKTITKQRVDSYYDLELRASVMH
DILDMIPEGIRQQKSKTILQHLSEAWRCWKANIPWKVPGLPEPIERIIQRYVKAKADGWI
SVAHFNRDRIRRGATVDKAVAKKNLGRLTRLWMKNEQERQQKFQKSGPFVSPDEAVSMFN
VMVQWLESRKFVPIPFPPINYKHDTKLLVLALENLKESYSAQGRLNSTQREELALIEQAY
DNPHECLARVKKFLLTQRVFKEVKLDMMDHYTHLVPVYEVDPLEKITDAYLDQYMWFEAD
RRRLFPNWIKPADSEVPPLLVYKWCQGINNIDEVWLTKEGECNVMLETSLNKLTEKMDFT
FVNRLLRLIVDSNIADYMTSKNNVNITFKDMNHVNQQGLVRGLQFSSFILQYYGLLVDLL
ILGGQRAAELAGPSDHPNEFLQFESREIQNSSPLKLYSRNVDRVHIFFRFSRDETNELIH
EFLSENPDPNFEQAIGYPNRRCWPRDSRMRLMRHDVSLGRAVFWEISSRLPSCLTSISWD
DSFGSVYSVDNPNLLFSMSGFEVRILPKCRANIETYTQEGVWDLIDNETKERTARAYLQV
TEEAVSNFNSRIRQILMSSGSTTFTKIASKWNTALISLFAYYREATVATDSLLDVLVKCE
TKIQTRIKLGLNSKMPSRFPPAVFYTPKELGGLGMLSASHILIPASDLKWSKQTDVGITH
FRSGMGSSDERLIPTVFRYITTWENEFLDSQRVWAEYTIKRQEAIQQNRRLAFEDMEDSW
DRGLPRISTLFQRDRHTLAYDKGHRIRREFKKYSLTRFNPFWWTSNHHDGKLWNLNAYRT
DVIQALGGIETILEHTLFKGTGFDSWEGLFWEKASGFEDSLKFKKLTNAQRSGLSQIPNR
RFTLWWSPTINRANVYVGFLVQLDLTGIFLHGKIPTLKISLIQIFRAHLWQKIHESLVVD
VSQALDNESDILQIDTVTKEQIHPRKSYKMNSSCADITLASTYPWKMSKPSLLHDQRDNF
DASSSSKYWIDVQLRYGDYDSHDISRYTRAKFLDYTSDNTSSYPAPTGLMVGIDLAYNMY
DMYGTWFPGMKPLMQNAMKSIMKSNPALYVLRERIRKGLQLYQSQAQESLLNSNNYAELF
DNEAQLFVDDSNVYRVNVHQTFEGNVTTKPINGALFILNPKTGQLFLKIIHTSVWAGQKR
LNQLAKWKSAEEVAALIRSLPTEEQPKQLIITRKNMSDPLEVHMLDYPNISIRQTELKLP
FDASMHVDKISDVVLKAREPQMVLFNIYDDWLKSISSFTAFSRLVLLLRALGIDKVKTKR
ILQPDSKVMVKDHHLWPTLTDTQWMEVETQLRDLILNDYSKKYNINVSSLTQVEIRDLIL
GQDVKAPSLKRQQIAEIEQNELKNVSSSQQFTAMKTTTRNVHGEEIVTVTTTNYEQQQFS
SSSEWRSRAISAANIYLRTRNIYVLTDEVSESKITFVLPNNLLKKFALISDLRTKTAGFM
FGKSPADNSQVKEIHCLVLVPQLGSNISVSMAKLPATCEYLEGLEPLGWIHTQSTDSDYL
SAADVTEHARFSSEYSGWNLDSTVTLVAAFTPGSISLSAYSLTSEGLDWGLKNQDTVSIN
PQGYMPQFGEKSSVLLTDRIKGFFLVPSTNLWNFAFNGNAWTSSMEYTLKLDTPLPFYHE
LHRPIHFIEFTNIEEDYLDIKTDDVFS
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatccaacttttccgttttcttctcattctgtcttatcaaatacggaaaaaaaa
caggctcaatcaaatgacaaaagatccatttcccctcctcctccacccccaggcaacaaa
aggcaaagatcattgcaaacaaggcctcccccgccacctcctccattgggcccaaagatt
tcaagtaataggccgttttcaggaagtgagtccatgcggtccatgcgtcctccacctcct
cctcctccttctcgaccatccattgctaactcttctactgttccagtgaaagactccggt
tcaaagaacagagttttagatgggagaaaacggaggtggctgcaactgcaaaagttaaga
tatgcaaatactactgggatcactaaaaaggcctttgttcatcctaccaaaattgaaatg
cctccagaacatttaaggaaaattataaatgaccatggcgacctctcctctaagagattt
gataaggataagagggcttatctggggtcgttaaaatatttgccacatgcgattcttaag
ctgctagaaaacatgcctcaaccctgggaagaaacgaaacaagtcaaagttctgtaccat
acaacaggtgctatcacattcgttaacgaaattccaagagtcgtagagcctatctacact
tcacaatgggccactacttggctaatgatgagacgagagaaaagagatcgtaaacatttt
aaacgaatgagatttcctccctttgatgatgatgaacctcccgtagactggggagaaaac
attcagggtgtcgctccactggacagcattcaaatagatcttgatgaagtcgacgacaaa
gccgtcattgagtggttttatgacagctctagacctcttgcagatgatccagcaataatg
aatggtgactcctatagaacttggaggttaaacctttctcagatgcacaatctttacaga
ctgtcaacgtcattactttcagaaataataaatccgaactactattatctttttgataga
gaatcctttttcacggcaaaggctttaaacatagccattcctggagggcctaagtttgaa
cccttgtacaaagacttggttaacttagaggatgaagatttcagcgagttcaactctgtt
gatagaataatttttcggcaacctataagaaccgagtacagagtagcttttcctttcttg
ttcaattcatacacacggtcagttcatgtttctgcacactcttatcccatgttctgctat
actagagttgatgacccaaatcttcccgctttccactttgcagagctattttcacccatc
tctccaaacttgttggagagcgttgaagttgaaaagcaagtattcgatctggaaactggt
gaagacttagccccagattttgtgttaccccaggacttttcatttttactcaatgatgaa
aatatcgaacaggaagaaaccaaagatgcaattcagctttggtgggctccgtatccatat
aatcgtcgcagcggcaagacagttagggcgcaagatgttccgcttgttaagagctggtat
ctgcaacacccaccagctgattacccagcaaaggtacgtatttcttaccagaagttattg
aaaaacaacgtcaagaacgaattacattcagccacccaatccaataagacaagaaacata
gctttactcaaatcgcttaaaagcaccaagtactttcaacagacatccattgattgggtg
gaagcgggtctccaggttgttcgccaaggcttcaacattttaaatcttctaatccataga
aaagggctaacgtatcttcatcttgattacaacttcaacttgaaaccgactaaaactttg
agtaccaaggagaggaagaggtcaaggtttggacatgcgtttcatttgatgagagagata
ctaagagttactaaactaatagtagatgctcatgtacagtacaggattggtaatgttgac
gcttttcagttggcggatggaatatactatattttaaaccatcttggtcagttgactgga
atataccgttataaatacaaggttatgcatcagataagggcatgcaaagatttgaaacat
gtcgtttattatcgattcaataaaatcattggaaaaggaccaggatgtggcttctggcaa
cctgcatggcgtgtttggctattcttcatgagagggatcatccctcttctagaacgatgg
ctgggaaatttattggctcgtcagttcgaaggaagacaatctaaaggtgttgccaaaacg
attaccaagcaaagagtagattcatactacgatttagagctcagagcatctgtcatgcat
gatatcctcgatatgattcctgaaggaatccgccaacagaagtccaaaacaatactgcaa
catctaagtgaggcgtggaggtgttggaaggctaatatcccgtggaaagttcctggttta
cctgagccaatcgaaagaattattcagcgctatgtgaaagcaaaggcggatggttggata
tcagtagctcattttaatagggatcgtattcgacgtggggcaactgtggacaaagctgta
gccaaaaagaatcttggtaggctgactagactttggatgaaaaatgaacaggaacgccag
cagaagtttcaaaagagtggcccctttgtttccccagatgaagcagtgtccatgttcaac
gtcatggttcagtggttggagtctagaaagtttgttccaataccttttcccccgattaac
tataagcatgataccaaattgttagttttggcattggagaacttaaaggagtcttactca
gctcaaggtagactcaactctacacaaagagaagagttagctctgattgaacaagcttat
gataaccctcatgaatgtttagctcgagtgaagaagtttttgctgacacaacgagtgttc
aaagaagttaagctagatatgatggaccactatactcatcttgtcccagtttatgaagtt
gacccactggaaaagattactgatgcttatttagatcagtatatgtggtttgaagctgat
aggagaagattatttcctaactggattaagccagcagattctgaggttcctccgcttctt
gtatacaagtggtgtcagggaataaacaatatcgatgaggtgtggctcactaaagaaggc
gaatgtaatgtgatgttggagacatccttgaataaactcacagagaaaatggattttacg
tttgtgaacaggttacttaggctaattgttgattcgaatattgctgactatatgacgtca
aaaaataacgttaacatcacatttaaggacatgaatcacgttaatcagcaaggtttagtt
agaggtctacaattttccagcttcattttgcagtactatggtctattggttgatctcctc
attttgggtggacagagagctgccgaactggcgggcccttctgatcatccaaatgaattt
cttcaatttgaaagcagagaaattcagaatagctctcctcttaaactgtattctcgtaat
gttgacagggtccatatattttttcgcttttcaagggatgaaacaaacgagctcatacat
gaatttttgtctgaaaaccctgatcctaactttgagcaggcaattggttatccaaataga
cgttgctggcccagagattcccgtatgaggttgatgaggcacgatgttagtttgggcaga
gcagttttttgggaaatcagtagccggttgccatcttgtttgacttcaataagttgggat
gactcttttggctcagtttacagtgtggacaatcctaatctattgttctcaatgtctgga
tttgaagttagaattttaccaaaatgcagagcaaacattgaaacttatacccaggaaggc
gtatgggatctcattgataatgagacaaaggagagaactgccagggcctatctacaagtg
accgaggaagcagtttcaaacttcaatagtcgtatccgccaaatattgatgtcgtctgga
tcaaccacatttacgaagatagcatcaaaatggaacacggctttgatctctttatttgcc
tactatagagaggcaactgtcgccactgactcactgctcgatgtacttgttaaatgcgaa
accaagattcaaactagaatcaaactaggtctcaattcgaagatgccatctaggtttcca
cctgctgtgttttacactcctaaggaattaggcggtctcggaatgttgagtgcatctcat
attctgattcctgcttctgatctcaaatggtcaaagcaaacagatgttggcataactcat
ttccgttctggaatgggtagcagtgatgagagattgataccaaccgtttttcgatatata
accacttgggagaatgagtttttggactcacaaagggtctgggcagagtacaccattaag
agacaagaagctatacaacaaaaccgtcggttggcttttgaagatatggaagatagctgg
gatagaggtctgccacgaataagcacgctattccaaagagacaggcatactttggcctat
gataaagggcatagaattagaagagaattcaaaaagtacagcttaactagattcaatcct
ttttggtggaccagcaaccatcacgacggtaaactatggaacctgaatgcttaccgaaca
gacgttatacaagctctgggtggtattgaaactattttagagcacacgttgttcaaagga
acagggtttgattcttgggagggacttttttgggagaaagcttcggggtttgaagattcc
ttgaagttcaaaaaattaactaatgcgcaaaggtcaggattaagtcagataccaaaccgt
cgcttcactctatggtggtctccaactatcaaccgagcaaatgtttatgttgggttccta
gttcagctagatcttactggaattttcttgcatggtaaaattcccacccttaaaatatcc
cttatccaaattttccgggcacatttatggcagaagattcatgaaagtttagtagtagat
gtttctcaggctttggataatgagtcggatatactccagattgacactgttactaaagaa
caaatacatcctcgtaagtcttacaagatgaactcctcatgcgctgacattacgttggca
agtacttatccatggaaaatgtccaagccatctcttcttcatgatcagagagataacttt
gatgcatcctcgtccagtaaatactggatagatgtccaattacgctacggtgactatgat
tcccacgatatttctcggtataccagggccaagtttttagattacacatctgataatacc
agctcatacccagctccgactggattgatggttggtattgatcttgcctacaacatgtat
gatatgtacggcacttggtttcctggaatgaaaccacttatgcaaaatgccatgaagagt
atcatgaagtcaaacccggcgctgtatgttttacgtgaacgtattagaaaaggtttacaa
ctatatcagtcacaagcgcaagaatccttattgaattcaaacaactatgcagagctcttc
gataatgaagctcagctgtttgtggatgattcaaatgtttatcgagtgaatgtacatcaa
acttttgaaggaaatgtgactaccaagcccattaatggagcgttatttattttaaatccc
aagaccggccaactttttttgaagattattcatacatcggtttgggctggtcagaaacga
cttaatcaactagctaagtggaaatctgctgaggaagttgccgctttgataagatcattg
cccaccgaagaacaaccaaaacagctcataatcacgcgtaagaatatgtccgatccactt
gaagttcacatgctagactatccaaatatttcaattcgtcaaactgagctcaagcttccg
tttgatgcatccatgcacgtcgataaaatctctgatgttgtcctgaaagcaagggaacca
caaatggtattgttcaatatctatgacgactggttgaagagcatatcatcattcaccgcc
ttttctcgtttagtgcttttgctaagggctttggggattgacaaagtcaaaacaaaacgt
atactgcaaccagacagcaaagtgatggtcaaggatcaccatctttggccaactcttacc
gatacacagtggatggaggttgagacacaattaagggatttgatcctcaacgactatagc
aaaaagtacaatatcaacgtatcatctcttacacaggttgagatacgggaccttattctt
ggtcaagatgtaaaagctccatcactgaagaggcagcaaatcgctgaaattgagcagaat
gaattgaaaaatgtcagttcgagtcaacaattcactgcgatgaaaactactacaagaaat
gtacacggagaagaaatagttaccgttacaactactaactatgagcagcaacagttttct
tcaagttcagagtggcgaagtagggcaatatctgcggctaacatctatcttagaacaaga
aacatttatgttctgacagacgaagtctctgaatccaagatcacttttgtattgcctaat
aatctacttaagaagtttgctcttatttctgatctacgtaccaaaactgcaggattcatg
tttggcaagtcaccagccgataattcccaggttaaagagatccattgccttgttttggta
cctcaactgggatctaacatatccgtttcaatggcgaaattgcctgcaacctgtgagtat
ttggaaggcctagaacccttagggtggatacacacacagtccactgactcggattatttg
tctgctgctgatgttactgagcatgcacgtttcagctcagagtattctggttggaacttg
gattcaacagtcactttagtcgcagctttcactcccggatcaatatcattatcggcttac
tctttaacttcagagggtctcgattggggattaaaaaatcaagacacggtttcaataaat
cctcaaggatacatgccgcaatttggagagaaatcctcagttttgcttacggatcgtatt
aagggcttctttctagtgccaagtaccaatctttggaacttcgcctttaatgggaatgct
tggactagcagtatggaatatactttgaaactagataccccattacccttttatcatgag
ctgcatcgtccgattcactttattgaatttaccaatattgaagaggactacttggacata
aagacagacgatgtttttagttag
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integrated database retrieval system
