Komagataella phaffii: PAS_chr4_0431
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Entry
PAS_chr4_0431 CDS
T01092
Name
(RefSeq) Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr4_0431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr4_0431
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr4_0431
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PAS_chr4_0431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_HEAT_N
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
8200713
NCBI-ProteinID:
XP_002493861
UniProt:
C4R7V7
LinkDB
All DBs
Position
4:complement(843539..849475)
Genome browser
AA seq
1978 aa
AA seq
DB search
MSFKQSLLSQTPSSITPSQFLADLISQHSNEQKNVLALLFAEILVPGSQHISSSTSTKTT
ALTPSTLPEATARGSQFRSLLKGLNIEQSTWDQIIELIFETDDYFSDATSISQVTVASIS
QFLASLEPENIDKFLRYVAHHKLKDHPFLFQKNLLVSLYSLNPQHGAIDLLSCPLQPVLA
NEPNSRRTIIWFKYIAELEVSLLVELKSRPATADENQINEIIEDSYKTAPEYLGLAALHL
WKENKDNNADPGTTLAYLNLCHHFIVQLLDINSPYLIILLTEFKEISEDELSSLLANYVS
LRPNGAITVATYALRDGVLSSVLNKLSKFNDCLSVAIEASNLGWNGLEKFVQNLLSNNPK
QVQSQLVDFLEEQSSFEYQSSNNESNAQIKSHRSLSIPVVYTLLKAIEGQKLSGDLVDKF
KNVQVSVIQAYPRLINFGRGHDEAILANGNSHSFPPSVEQEMKSYYQKMYLKQLEIKSVI
NSLKAFKDSDNPHEQDIFACMIHSLLDEYRFFPEYPIDALATTSVLFGSTIYFQLIEGTT
LTIALRYILESCRQPPEDNMFKFAVQALYTFREKLGDYKSYCALLSEVPSLKQQPQIYEI
LQQVMNGTFRAPPSIPSQGIGSGERQPSQGKQPSNDSLVVSKFKSLNLAVELQRRDQETP
DENVSDHVLFLVNNITEENLSAKVEEMNKVLEPQYFEWFSNYLVTQRVKTEPNYHSLYCS
LISRLDNLLLDAYILNLTFKEIILILNKCYDVNDEISGPERTHLKNLGSWLGLITLTRNR
PLKHRNLALKMLVLEAYDKNKLEVVLPLVCKILDQAKNSKVFLPPNPWTVGNLKLLKELY
DVGNLPLKLKFEIEVLYNSLNTKLGDIEAANIIRTHQPADIDQFAVATNMMKELTLSNVN
QMKQQQQQQQQQQQQQQHQQQQQQQQQQQQQFFLQQQAALQAQQVQQPQIPFDPQANPGV
STATPADESNQLKVFSNLLGTTSFVTIPTLKYLFQAALARAVKEILPLVVDRTNLIALVT
TKALVSKDFALESDEAKFRTAYINQVSYLTESLSLASCRDPLRESIQMNALQIANTMPNI
DSTLFEELPQAITDNIDLASTIIQKAAVERAIQDIDELMAPQLAIRRQHRELKPNQQFID
PTMRSRYPMLLPVPLGLKSDGVIPKQFMIYENFGKNRIVSPMQQPEHLQNINSQLNPSLR
QGAQQPLVPPGVAEQMKQQMPPALPGQGGAVSLEQTFMFLQQLVDSVINLTRDAPEKLIS
EVNTDSVVVTVLGEILQTCIGATVTDSLILKISQYVMNMLFVRTNSSLTQNTLVFLLDKL
CELSPFTAKDISWWLVHAEDERKYNKNVMRDLILLGLVPLAELDRSLAIQIEKKNVKAVL
FTIYLIHDSILSEDPIALRADLINSIEALQVLAHEPSEIGRKAYMSISRLKAIVKSNSIQ
IFKMFGTSTISKKQYMSYVFAEWVKLVQYSRVNRVLEDFIWQLVDDGIVNNSENLSLLIT
TATEMSVAAFSKEADPSKKLHIETYAPADALALLLVKLLLMQEDSTGVERKTFFNSMLAV
IVLAFASDHNNNSTSFNERPYFRIFSSLFSYWLSARHEFEDGDDESLKTFNSELYLILAQ
NLMVMQPSSFPGFTFAWISLISHRMFMPMILEVPENKGWGRFVNLLQCLLSFQLHYVDSE
KISDVVNVVYKGTLRIIALLSHDFPDLLVQYHYQLISSTPESYVQLKNIISSAYPKGITV
PNPFQQGLKVDRLEEIKQEPPIGYHPESDLTAKGLKKPVESYLRIPSQSLLKTISTGLSV
AEPRNGKSKYDAGLVNAVVFFVGIAAVEEQKSFRDGSSFDSTSNHVMLLSSLIKDGDVEL
QNLILTAIANQLRYPNSHTHWFSCILLHFVGSATLWGDQREAIKFNISCVLTKRAMSYNP
IPWGILVTFLELVSNSEYEIFSSPFIKGDATLERLFGTLQHHVRNQKPIDEQPEPLKL
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaacagtccctcttatcacaaacaccttccagcataaccccatctcagttc
ttggctgacttgatttcgcagcatagtaatgaacagaaaaatgtgcttgcattgttattt
gccgaaatcttggttccaggatcccaacacatttcatcttccacatccacaaaaacaact
gcattaactccttccaccctaccagaggctacggccagaggttcacaatttagaagtttg
ctgaaaggtttaaatattgaacagtctacgtgggatcaaattattgagctcatctttgaa
acagatgactacttttctgacgcaacatcaatttctcaggtaaccgttgcctccatttca
caattcttagcttcattagaacccgagaatattgacaaatttttaagatacgttgctcat
cataagctcaaagatcatccatttttgtttcaaaagaaccttcttgtatccttgtattcc
ttgaacccacaacatggtgctatagatttattgtcctgcccattacaaccagtgctcgcc
aatgaaccaaactcacgaagaactattatatggttcaaatacattgctgagctggaagta
tcacttttggtcgaactgaaatctagaccagcaactgcagatgagaatcaaatcaatgag
atcattgaggattcttacaagactgccccagaatacttaggtttggcggcactacacttg
tggaaagaaaataaggacaataatgccgatccaggaactaccttggcatatttgaatctt
tgtcatcactttatcgttcagttacttgatatcaattcaccatatttgataattttgctg
actgagttcaaagaaattagcgaggatgaactttcgtcgttacttgcaaactacgtttca
ttgagacctaatggtgcgatcactgtggcaacttatgctctccgtgacggtgtactttct
tccgtacttaacaaattatcaaagtttaatgattgtttaagtgttgctattgaagccagt
aatcttggttggaatggtctagaaaaatttgttcagaatttgttaagtaacaatccaaag
caagtccagagtcagctggttgattttttggaagagcagtccagctttgaataccaaagt
tctaacaatgaatccaatgctcaaatcaagtctcataggtcgttgtcaattcctgttgtc
tacactttactcaaggcaatcgaaggacaaaagctgtctggagatttggttgacaaattc
aagaatgtccaagtttctgttattcaagcttatcccagactgatcaactttggccgtggt
catgacgaagccattctggcgaatggaaattcacactcattcccaccttcagtcgagcaa
gaaatgaagagttattaccagaaaatgtacctgaaacagttggagattaaatccgttatt
aattcattgaaggcattcaaggattcggataatcctcatgaacaagacatttttgcttgc
atgatccactctttactcgacgaatatagattctttccagagtatccaatcgatgcgttg
gcaaccacttcggtactttttggttcaacgatatattttcagttgattgaaggtactact
ttaacaatcgctttgcgatacattttggagagttgtcgccagccaccagaagacaacatg
tttaagtttgctgttcaggccttatacacctttagggaaaagctgggcgattacaagtca
tattgcgcacttctctcggaggtcccttctttgaagcaacaaccacaaatttatgagatt
cttcaacaagtcatgaatggaacttttagagctcctccctcaatcccttcccagggaatt
gggtctggcgaaagacaaccttcacagggaaagcagccgtcaaatgattcgttggtagtg
tcaaagttcaagtctcttaatttggctgtagaactccagcgtagagaccaagagacacca
gatgaaaacgtttctgatcatgtcctgttcctcgtgaacaatataactgaagaaaatctt
tctgctaaagtagaagaaatgaataaggttttggagcctcaatattttgaatggttttct
aactatttggtcacccaaagagtgaaaacagaacctaattaccattcactttattgttct
ttgatttctcgattggataatctgctattggatgcatacattcttaacctcacattcaaa
gagattattctcattttgaataagtgttatgatgtcaatgatgaaattagtggtcctgag
agaactcatctcaagaatttaggttcttggttaggactgatcacccttaccagaaacaga
ccactcaagcacaggaacttagctctgaaaatgttggtcctggaagcttacgataagaac
aagttagaagttgttttaccattagtttgtaagattctagatcaggccaagaattcaaag
gttttcttacctcccaatccgtggacagtgggaaatctgaaactgctaaaagagctttac
gacgttggtaatttgccattaaaattgaagtttgagattgaagtactgtataattcattg
aacacgaagttgggagatattgaagcagccaacataattagaacacatcaaccggccgat
attgaccagtttgcggtagctacgaacatgatgaaagaattgacactatctaatgttaat
caaatgaagcaacaacaacagcagcagcagcagcagcaacaacaacaacaacatcagcaa
cagcaacaacagcaacagcaacaacaacagcaattctttttgcaacaacaggctgctttg
caagctcaacaagttcaacagccccaaataccatttgatcctcaagccaatcctggagtt
agtacagctaccccagcagatgagagtaaccaattgaaagtgttctccaatttgttggga
acgacgtcttttgttacaattccaactctaaagtatttgtttcaggcagctttagcccga
gctgtaaaggagattttaccccttgtagttgacaggacaaacttaattgctctggttacc
actaaggcactggtttcgaaggattttgctctagaatcggatgaagctaaattccgaacg
gcctatattaaccaggtcagctatctgacggagtcattaagtttggcttcttgtcgtgat
ccactaagggagagcatccaaatgaacgcgctccagatcgccaacaccatgcccaatatt
gatagcacactttttgaagaactgcctcaagcaattacggataatatcgatttggcctca
acgattattcagaaagctgctgtggaacgtgcaattcaggacattgacgaattaatggca
cctcagctggctattcgtcgccagcatagggagttaaaacctaatcaacaattcattgat
cctactatgaggtcaagatacccaatgcttctgcctgtacctttgggactgaaatccgat
ggtgtcattccaaaacagttcatgatatacgaaaactttggtaagaacagaattgtttct
cctatgcaacagcctgaacatttgcaaaacataaacagccaactaaatccttccttacgt
caaggagcccaacagcctttggttccacctggagttgctgagcaaatgaaacagcaaatg
cccccggcattaccaggccaaggaggcgccgtttcactggagcaaacctttatgtttttg
caacaattagttgactctgtgattaacctgacccgtgatgctcctgaaaagcttatttca
gaagtcaacaccgatagtgttgtggtaacagtactaggagaaatattgcagacttgtatt
ggagctactgtaacagattcactcattctcaagatatctcagtacgtcatgaacatgctg
tttgtccggaccaactcatcattgactcaaaacacgttggtgtttttgttggacaagttg
tgtgagttatcgccttttacagccaaggatattagttggtggttagtccatgctgaggat
gaaagaaagtataacaagaatgtcatgagagatttgattctgttgggattggttccgtta
gctgaacttgatcggtcgttggcaattcaaatagaaaagaaaaatgttaaggccgttctc
tttacaatctatttgattcatgactccatcctcagtgaggacccaattgcattacgtgca
gaccttataaacagtatagaggcccttcaagtccttgctcatgaaccatcagagatcggc
agaaaggcctacatgtctatctcaaggctaaaagcaatcgtcaaaagcaattcaattcag
attttcaagatgttcggaacctccacaatatctaaaaaacaatacatgagctatgtattt
gctgaatgggttaagttggttcaatattcgagagtgaacagagtattagaagacttcata
tggcaattagttgatgacggtattgtgaacaacagtgaaaatctatctctcttgatcacg
actgccaccgaaatgtctgttgctgctttttccaaagaagcagacccaagtaagaagttg
cacattgagacgtatgctcccgcggacgcactcgctttgttgttggttaaacttttgctt
atgcaagaggattctactggagttgagagaaagacctttttcaattctatgttagctgtt
atagttcttgcctttgcaagcgaccataacaataacagtactagtttcaatgaaagacct
tatttcagaattttctcatcgctgttttcgtactggctaagcgctagacacgaattcgaa
gatggtgacgatgaatcgctgaagacatttaattcggagctctatctcattttagctcag
aacttgatggtaatgcagccaagttcatttccgggcttcacttttgcatggatttctttg
atttctcatagaatgttcatgccgatgatcttggaagtacctgaaaataagggatggggt
cgatttgtgaatctgttacaatgtttactatcatttcaacttcattatgtcgatagtgag
aagatcagtgacgtagtgaatgttgtttacaaaggaactctgcgaatcattgccctgttg
tcgcacgattttcctgatctattggttcaatatcattaccaattgataagttcaactcct
gaatcttatgtccaattaaaaaatattatatcatcagcctatcctaagggaataactgta
cccaatccatttcaacaaggattaaaagttgacaggctagaagaaatcaagcaagaacct
ccaattggctatcaccccgagtcagatttaacagccaaaggcctcaagaagcccgtcgaa
agctacctgcgtattccttcgcagtcattattgaaaaccatctcaactggcctaagcgtt
gctgagcccagaaatgggaaaagtaagtatgatgctggtctagtcaatgctgtagtattc
tttgtgggaatcgcagcagttgaagaacaaaagtcattccgcgatggttcttcctttgat
tctacctccaatcatgtgatgctgttgtcatctttgatcaaggacggggatgttgagtta
cagaatttaatcttaacagcaattgccaaccaattgaggtatcccaactcgcacacgcat
tggtttagttgcattttgttgcattttgtgggatcagctactctatggggagatcaaaga
gaggctataaagttcaatattagctgtgtattgacaaagagagcaatgtcatataacccc
atcccatggggtatattagtgacgttcctggagttggtcagcaacagtgagtatgagata
ttctcttccccatttatcaaaggtgatgccacgctggaaagattgtttggcacactgcaa
caccatgtgaggaaccaaaaacccattgatgaacaaccggaaccgctgaagttgtag
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