Pseudomonas palleroniana: LDL65_08120
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Entry
LDL65_08120 CDS
T09728
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDL65_08120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppae03021
]
LDL65_08120 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_08120 (rpoB)
Enzymes [BR:
ppae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDL65_08120 (rpoB)
Transcription machinery [BR:
ppae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDL65_08120 (rpoB)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDL65_08120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UOP12507
LinkDB
All DBs
Position
complement(1725175..1729248)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKGET
LSLELVPSRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMSDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgcggtgttacgtacgccgtaccgttg
cgggtaaaagtccgcctgatcattttcgataaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccattgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
tttgaccacgaccgcggcaagacgcacagctcaggtaagctcctgtactccgcgcggatc
attccgtaccgcggttcgtggttggacttcgagttcgacccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcactcggttatacc
actgagcaagtgctggatgccttctacaccaccaacgtattcagcctgaagggtgaaacc
ctcagcctggaattggtgccttcgcgcctgcgtggtgaaattgccgttctggatatccag
gacgagaagggcaaggttattgttgaggctggtcgccgtatcactgcgcgccacatcaac
cagatcgaaaaagctggtatcaaagagctggaagtgcctctggactacgttctgggtcgc
accaccgccaaggtcatcgttcacccggctacaggcgaaatcctggctgagtgcaacacc
gagctgaacaccgagatcctggccaagatcgccaaggctcaggttgttcgcatcgagact
ctgtacaccaacgatatcgactgcggtccgttcatctccgatactctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggtgagcca
ccgaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggttcgggcgtactgtgcaaggaagacattgttgcggtcctgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacttgggtaaccgtcgcgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtgcgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtatccgcactgggcccg
ggtggtctgacccgtgagcgtgcaggctttgaggttcgtgacgtacacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccttg
gctgcgtacgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggttaag
gacgctctggtcaccgacgaaatcgttttcctgtccgccattgaagaagctgatcacgtg
atcgctcaggcctcggccacgatgagtgacaagaaagtcctgatcgatgagctggtagct
gttcgtcacttgaatgagttcactgtcaaggcgccggaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtttcggttgcagcgtcgttgatcccgttcctggagcacgacgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtacccaccctgcgtgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcgcgtgactccggcgtttgc
gtcgtggcgcgtcgtggtggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgctgatgacgaagttgaaaccggcgaagctggtgtcgacatctacaacctgaccaag
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaaaggtgat
cgcgttcagcgtagcgacatcatggctgacggcccgtccaccgacatgggtgagctggct
ctgggtcagaacatgcgtatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaagaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggctcgtgacaccaagcttgggccagaagagatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggttggtaaggtcactccgaaaggcgagactcagctg
actccggaagagaagctgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgtgtgcctaccggcaccaaaggtactgtcatcgacgtacaagtcttcacc
cgtgacggtgttgagcgtgatgctcgtgcactgtccatcgagaagactcaactcgatgag
atccgtaaggacctgaacgaagagttccgcatcgttgaaggcgcgaccttcgaacgtctg
cgttccgctctggtaggccacaaggccgaaggtggcgcaggtctgaagaaaggtcaggac
atcaccgatgaagttctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctctgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaatcgtatgatcgaagagcaacgcaaggtcgctgacctgcgtaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacaccttctcc
gaccaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggtcgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
