Pyxidicoccus parkwayensis: JY651_21275
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Entry
JY651_21275 CDS
T09992
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppak
Pyxidicoccus parkwayensis
Pathway
ppak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JY651_21275 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppak03021
]
JY651_21275 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppak03400
]
JY651_21275 (rpoB)
Enzymes [BR:
ppak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JY651_21275 (rpoB)
Transcription machinery [BR:
ppak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JY651_21275 (rpoB)
DNA repair and recombination proteins [BR:
ppak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JY651_21275 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QSQ27289
UniProt:
A0ABX7P9W1
LinkDB
All DBs
Position
complement(5667778..5672007)
Genome browser
AA seq
1409 aa
AA seq
DB search
MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAPEKREDIGLQGVFKSV
FPIRDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI
RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVSDTAKKNPLEFKGSTEEI
LNYYYATETIYLQSAQDFEKSVELELLPGQRATRDIKTKTGELIVKKNRKFTRAAIKKLE
AAKMKTLPIDADELFTKVSAYDVVDENTGEVILECNEEVSQDKVDELLKRNIKEFKVLFI
DNLNVGPYLRETLMLDKIETPEQAIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS
KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE
LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT
NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY
ARVNEFGFVETPYRKVEAGVVTTDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR
GGEFVQARAEDVDLMDVSPNQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP
LVGTGIEAIVARDSGVTCVARRDGVVESVDAGRIVVKADVPANLSDVTSEVDIYNLLKYQ
RSNQNTCLNQKPIVSKGDKVRKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL
ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV
KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK
GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRALVRGKEVQGKLVDDKGKILL
KKGDILNDELLTTVPYKYWGEISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIARIKKG
DELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVLN
PLGVPSRMNIGQILETHLGWAAKGTGEALQQYVEANWSSAAIKERLKVIYDDPKFGEFLD
SLTDEEIVQLCRRSKRGIHVATPVFDGAHELEIHKLLDEGHLPRTGQMVLFDGRTGEPFD
QNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYG
AAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVELLES
APPERQRSFGGDFLGGGDGEERGKTGTEA
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcagatccagaacaatttccgcgtgcggaagaccttcgcgaagatcgcgaag
atcatcgacattcccaatctcatcaacatccagaagcagtcctacgagaagttcctccag
gcggacatcgcgccggagaagcgtgaggacatcggtcttcagggtgttttcaagtccgtc
tttccgattcgcgacttcaacgagacctcctcgctggagttcgtcagctatcacctggag
aagccgaagtacgacgtcgatgagtgccaccagcgtggcatgacctactcggcgcccatc
aaggtcgtcgtgcgcctggttgtctgggacaaggacgaggagaccggcgcccagtccatc
cgtgacgtgaaggagcaggaggtctacttcggcgaaatcccgctgatgacccagaacggc
accttcatcatcaacggcacggagcgcgtggtcgtcagccagctgcaccgcagcccgggt
gccttcttcgaccacgacaagggcaagagccactcgtccggcaagctgctctacaacgcc
cgcatcattccctaccgcggttcgtggatcgacttcgagttcgaccacaaggacctgctg
tacgtgcgcatcgaccggcgccgcaagctgccggccaccgtgctcatccgcgccctcggc
gccgtcagcgacaccgcgaagaagaacccgctggagttcaagggctccaccgaggaaatc
ctcaactactactacgcgacggagaccatctacctccagagcgcgcaggacttcgagaag
agcgtcgagctcgagctgctccccggtcagcgcgccacgcgcgacatcaagacgaagacg
ggcgagctcatcgtcaagaagaaccgcaagttcacccgcgccgccatcaagaagctggaa
gcggcgaagatgaagacgctccccatcgacgcggacgagctcttcaccaaggtgtccgcc
tacgacgtggtggacgagaacacgggcgaggtcatcctcgagtgcaacgaggaggtctcc
caggacaaggtcgacgagctcctcaagcgcaacatcaaggagttcaaggtcctcttcatc
gacaacctcaacgtgggtccgtacctgcgtgagacgttgatgctggacaagatcgagacg
cccgagcaggccatcatggagatctaccggcgcctgcgcccgggcgatcctccgacgccc
gagacggccatcaacctgttcaccaacctgttcttcaaccccgagcgctacgacctctcc
aaggtcggccgcctcaagctgaacttcaagttcggcctcgaggagccgctcgacgggcag
atcctcaccaagcgggacatcctcgaggtgatccgctacctgatcgatctgaagaacggc
aagggcaccatcgacgacatcgaccacctgggcaaccgccgcgtccgcgcggtgggcgag
ctgctggagaaccagtaccgcatcggcctggtgcgcatggagcgggcgatcaaggagcgc
atgagcctccaggagatcgagacgctcatgccgcacgacctcatcaacgccaagcccgtc
acggcggtcatcaaggagttcttcgggtccagccagctgtcgcagttcatggaccagacg
aaccccctgtccgaggtcacgcacaagcgtcgtctgtccgccctcgggcccggcggcctc
acccgcgagcgcgcgggcttcgaggtgcgcgacgtgcacccgacgcactacggccgcatc
tgccccattgagacgccggaaggcccgaacatcggcctcatcgcgtcgctgtccacctac
gcgcgcgtcaacgagttcggcttcgtggagacgccgtaccgcaaggtggaagcgggcgtg
gtgacgacggacgtggccttctactcggcgctggaggaggagaagcacaccatcgcccag
gcgaacgcggagacggacaagaagggcaagttcgccaacgcgctggtgtccagccgccgc
ggcggtgagttcgtccaggctcgcgccgaggacgtggacctgatggacgtgtccccgaac
cagctcgtgtcggtggccgcgtcgctcatcccgttcctggagaacgacgacgcgaaccgc
gcgctcatgggctccaacatgcagcgccaggcggtgcccctgctgcgcaccgcggccccg
ctggtgggcacgggcatcgaggccatcgtcgcgcgcgactcgggcgtgacgtgcgtggcc
cgccgcgacggcgtggtggagagcgtggacgccggccgcatcgtggtgaaggccgacgtg
ccggccaacctgagcgacgtgacgagcgaggtcgacatctacaacctcctcaagtaccag
cgctccaaccagaacacctgcctcaaccagaagcccatcgtcagcaagggcgacaaggtg
cgcaagggtgacgtcatcgccgacggcccggccaccgagacgggtgagctggcgctgggg
cagaacgtcgtcgtcgcgttcatgccgtggcagggctacaacttcgaggactccatcctc
atcagcgagcgcatcctcaaggacgacgtcttcacgtcgatccacatcgaggagttcgag
tgcatcgcgcgcgacaccaagctgggcaaggaggagatcacccgcgacatcccgaacgtg
ggtgaggaggccctcaaggacctcgacgagagcggcatcatccgcatcggcgccgaggtg
aagcccggcgacgtgctggtgggcaagatcaccccgaagggcgagacgcagctgtctccg
gaagagaagctgctgcgcgccatcttcggcgagaaggccggcgacgtccgcgacagctcc
ctgcgcgtgccgccgggcgtggtgggcaccgtcatcaacgccaaggtgttcagccgcaag
ggcgtggagaaggacgagcgcgccaagcagatcgagtcgatggaggaggcgaagctcctc
aaggaccagaacgacgagatcaaggttctccaggacagcgccttcggccgcatccgcgcg
ctggtgcgcggcaaggaggtccagggcaagctcgtggacgacaaggggaagattctcctg
aagaagggggacatcctcaacgacgagctgctgaccacggtgccctacaagtactggggt
gagatctccgtgggcgacccgctcgactcgcgcctgcgcgacatcctccgcaacctggag
gagacgaaggaggccgtgaagctggccttcggcgagaagattgcccgcatcaagaagggc
gacgagctgccgccgggcgtcatcaagatggtgaaggtgtacgtcgccatcaagcgcaag
ctggccgtgggcgacaagatggccggccgccacggaaacaagggcgtcgtgtcccgcatc
ctccccgaggaggacatgccgtacctggaggacgggcgtccggtggacatcgtcctcaac
ccgctcggcgttcccagccgcatgaacatcgggcagatcctcgagacgcacctgggctgg
gcggccaagggcaccggcgaggcgctccagcagtacgtggaggccaactggagctccgcg
gccatcaaggagcggctcaaggtcatctacgacgacccgaagttcggcgagttcctcgac
agcctcaccgacgaggagatcgtccagctgtgccgccgctccaagcgcggcatccacgtg
gccacgccggtgttcgacggcgcccacgagctggagatccacaagctgctcgacgagggc
cacctgccgcgcaccggccagatggtgctcttcgacggccgcaccggtgagccgttcgac
cagaacgtcaccgtgggcgtcatgtacatgctgaagctgcaccacctggtggacgagaag
atccacgcccgctcgattggtccctactcgctcgtcacgcagcagcccctgggcggcaag
gcccagttcggcggccagcgtctgggcgagatggaagtctgggcgatggaggcctacggc
gcggcgtacacgctgcaggagttcctcaccgtcaagtcggacgacgtggtgggccgcacg
cgcatgtacgaggccatcgtcaagggcgacaacgtcctcgagagcggcctgcccgagtcg
ttcaacgtgctcctcaaggagctccagtccctggcgctcgacgtggagctgctggagagc
gctccgccggagcggcagcgcagcttcggcggcgacttcctcggcggtggtgacggcgag
gagcgcggcaagacggggaccgaggcctga
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integrated database retrieval system
