Polynucleobacter paludilacus: AOC06_00265
Help
Entry
AOC06_00265 CDS
T08333
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppal
Polynucleobacter paludilacus
Pathway
ppal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOC06_00265 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppal03021
]
AOC06_00265 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppal03400
]
AOC06_00265 (rpoB)
Enzymes [BR:
ppal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOC06_00265 (rpoB)
Transcription machinery [BR:
ppal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOC06_00265 (rpoB)
DNA repair and recombination proteins [BR:
ppal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOC06_00265 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QWD87055
LinkDB
All DBs
Position
43409..47509
Genome browser
AA seq
1366 aa
AA seq
DB search
MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQAEKPPTSRITEGLQAAFTSA
FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPTKVKEV
KESEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNNEQILANFFNFDHFTLSANGG
SMEFVPERLRGQLANFDVLDKNGVVVIQKDKRINAKHIRELEAAKTKNIVVPDDYLVGRV
VARNIIDPDSGEILAYANDEITEELLASLRDAGIKQLETIYTNDLDSGAYISQTLRTDET
ADQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNRPEMEG
PMVLSNEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVAN
SKVSDEVVYLSAIEEAKYVIAQANATIDKNGKLADELVSARQAGETMMVSPERIDFIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVDSGTVV
LANRGGIVDYVDANRVVIRVNDDETAAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGDR
VERGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETTLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDARAQSIIQEELQRY
RLDLNDQLRIVEGDAFMRLEKLLVGKVANGGPQKLAKGSKIEKAYLADLDKYHWFDIRPA
DEELASQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAQG
IGKRIDEMVREQAKQAELRKFLKQLYNETGRHEDIDGFTDEQITALAENLRQGLPFATPV
FDGATEAEIARMLELAYPQDVAAALQMTPSRQQMILRDGRTGDQFERPVTVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVTGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIDIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaactatagcttcaccgaacgcaagcgagtccgtaaaagctttgctaagcgagtaaat
aatcaccaggttccatacctgattgcaacccagctggagtcctacgctaaatttttgcag
gcagaaaagcctccaacttcgcgtattactgaaggtctacaagcagcatttacttctgct
ttcccaattgtttctaacaatggttatgcgcgcatggaatatgtgtcatatcaattgtca
cagccaccgtttgacgtcaaagaatgtcagcaacgaggctacacctatcactccgccttg
cgcgctaaagttcgcttgattatttatgatcgcgaagcgcctactaaggtaaaagaagtt
aaagagagcgaagtctacatgggcgagattcccttgatgactgagaatggctcctttgtt
atcaacggtactgagcgcgtcatcgtttctcagttgcaccgttccccaggcgtgttcttt
gagcacgataaaggcaagacacatagctcgggtaagttgctgttctcagcacgcatcatt
ccttatcgtggttcatggctcgatttcgagtttgatccaaaagatattttgtatttccgt
gttgaccgccgtcgtaagatgcctgtcaccattttgctcaaagcaattggcttaaataat
gagcaaatcctcgcgaacttcttcaactttgatcatttcactttaagtgcaaatggcggc
tcgatggaatttgttcctgagcgcttgcgtggccagttagccaacttcgatgtgcttgat
aagaatggcgttgttgtcattcaaaaagataagcgtatcaacgcaaaacacattcgtgaa
ctcgaagctgctaaaactaaaaacatcgtagtgcctgatgactatttagttggtcgtgtc
gtggcacgcaacattattgatccagactctggtgaaattttggcttacgctaatgatgaa
attaccgaagagttgttggcaagcttgcgggatgcaggtatcaagcaattagaaactatc
tataccaatgatttagattccggcgcatatatttcccagaccttgcgtactgacgaaact
gccgatcaaacagctgctcgtatcgcgatttatcgcatgatgcgtcctggtgagccacca
acagaagatgcagttgaggccttgttccagcgcttgttctataacgaagacagttatgac
ctgtctcgtgttggtcgtatgaaggtcaatagtcgcttgaatcgtccagagatggaaggt
ccaatggttttatctaatgaagatatcctcgacaccattaagtctcttgtagatttgcgt
aacggcaaaggcgaagtggacgatatcgatcacttaggtaatcgccgtgtgcgttgtgtt
ggtgagttggctgagaatcaattccgcgctggtttatcccgcgttgagcgtgcagtaaaa
gaacgtcttggtcaggccgagacagaaaacttgatgccgcatgatttgattaacagcaag
ccaatctcttcggcgatacgtgagttctttggttcttcacagttgtctcagtttatggac
caaaccaacccactttcagagatcacgcacaagcgtcgtatttctgcattgggacctggt
ggtttgacacgcgagcgcgcaggtttcgaagtgcgcgatgtgcatccaactcactacgga
cgtgtttgcccaatcgaaactccagaaggaccaaacattggtctgatcaactcactcgcg
ctatttgcccgtttgaatgagcatggtttcttggaaacgccatatcgcaaagttgctaat
agcaaagtcagcgatgaagttgtttatttatcagcaattgaagaggcgaagtatgtgatt
gctcaggcaaacgcgacgatcgacaagaatggtaagttagccgatgagttggtctctgct
cgtcaagctggcgaaacgatgatggtcagcccagagcgcatcgattttatcgacgttgct
ccaagccagatcgtttctgctgctgcttctctcgttcccttcctcgagcacgatgatgcg
aaccgcgctttgatgggtgcgaacatgcagcgtcaagcagttccttgcttgcgaccagat
aagccattagttggtactggcctcgagcgcatcgtcgcagttgactcaggcactgttgta
ttggcaaatcgtggcggcatcgttgactacgtcgatgcaaaccgtgtggtgattcgtgta
aacgatgacgaaactgcagccggtgaagttggcgtggatatttataacctcatcaaatac
acccgctcaaatcaaaacaccaatatcaatcagcgcccaatcgtaaaagtaggcgatcgt
gttgagcgcggcgatgtggttgctgacggcgcctctaccgatttaggtgagttggctttg
ggtcaaaatatgactgtggcatttatgccatggaatggttataacttcgaagactccatc
ttgatttctgagaaggttgttgcagatgaccgttacacctcaattcatattgaagagctg
tctgttgttgctcgcgataccaaattaggttccgaagaaattactcgcgatatctctaat
ttggccgagtcacaactctcccgtttagacgagagcggtattgtttacattggtgccgaa
gttgaagctggcgacgtattggttggtaaagtcactccaaagggtgagaccactctcacc
cctgaagagaagcttctccgtgcgatctttggtgagaaagcgtctgatgtaaaagatact
tccttacgcgtcccgtctggaatgattggtaccgtgattgatgttcaagtcttcacccgt
gaaggcattgagcgcgatgcacgagcacaatccattattcaggaagagttgcagcgttat
cgcttggacttaaatgatcaattgcgaattgttgaaggcgatgccttcatgcgtctagag
aagcttttggttggtaaagttgctaacggcggcccacagaagttggctaaaggtagcaag
atcgaaaaagcgtatttggctgatttagataaatatcattggtttgatattcgtccggca
gatgaagagcttgcaagccaagttgaggcaattaaatcctccatcgaagctaaacgtaag
caatttgacgaagcgtttgaagagaagcgcaccaagttaactcaaggtgatgatcttcag
cctggcgtaacaaaaatggttaaggtctacttagccgttaagcgtcgcctacagcctggc
gataagatggccggccgtcacggtaacaaaggtgtggtttcaaaaatcgcccctgccgaa
gatatgccatttatggctgacggacgacctgtcgatatcgttttgaatcctttgggcgtt
ccttcccgtatgaacgtgggccagattttggaaacccacttaggttgggcagcccagggt
attggtaagcgtatcgacgagatggtccgtgaacaagctaaacaagctgagttacgtaag
ttcctcaagcagctttacaacgagactggccgtcacgaagatattgatggtttcaccgat
gagcaaattactgctttggcagagaacttgcgccaaggccttccatttgctacgccagtg
tttgacggtgctaccgaagcagagatcgccagaatgttggagttggcttatccgcaagat
gtcgctgctgcattacaaatgacaccatcacgtcagcaaatgattctgcgtgacggtcgt
acaggcgatcagtttgagcgtcctgtaacggttggtgtgatgcacgtcttgaagctgcac
catttggtcgacgacaagatgcatgcccgttcaaccggaccatactctttggttacacag
caaccattgggcggtaaagctcagtttggtggtcagcgctttggtgagatggaagtttgg
gctctcgaggcatacggcgcttcatacgttctgcaggaaatgctgaccgtgaagtccgat
gacgtcaccggccgtaccaaagtttacgaaaacatcgtcaagggcgagcacacaattgat
gctggcatgcccgaatccttcaacgtattggtaaaagaaatccgttcgttgggtattgac
attgacatggagcgcaactga
DBGET
integrated database retrieval system
