Paracoccus pantotrophus: ESD82_18120
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Entry
ESD82_18120 CDS
T06495
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppan
Paracoccus pantotrophus
Pathway
ppan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ESD82_18120 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppan03021
]
ESD82_18120 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppan03400
]
ESD82_18120 (rpoC)
Enzymes [BR:
ppan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ESD82_18120 (rpoC)
Transcription machinery [BR:
ppan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ESD82_18120 (rpoC)
DNA repair and recombination proteins [BR:
ppan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ESD82_18120 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QFG37979
UniProt:
A0A1I5LGB4
LinkDB
All DBs
Position
1:complement(1536253..1540461)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQELATNPLNPLAAPRQFDEIKISLASPEEILAWSYGEVKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLSYGQLLTEEEFLDAQDQYGADAFT
ANIGAEAIREMLANIDLAATAEQLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGNNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTMEREGMKGEGMVFANLEEVEHAL
ASGAVHLHARITARLPQIDENGNEVIKRFETTPGRIRLGALLPKNAKAPFELVNRLLRKK
DIQNVIDTVYRYCGQKESVIFCDQIMGLGFREAFRAGISFGKDDMVVPPTKWDLVEETQD
QVKQFEQQYLDGLITQGEKYNKVVDAWSKCNDRVTDAMMKTISATKKDENGAELEPNSVY
MMAHSGARGSVSQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIREHDCGTDRAITASAAVNDGEVVSPLSERVLGRV
AAEDVLVPGEDVVIVRKNELIDERKADEIEGAGVQNVRIRSALTCESDDGVCALCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFIAAAQEGTVAFENES
TLENANGELIVMNRNMQLHIKSATGETLASHKLFYGSKLFVREGDAVARGQKMFEWDPYT
LPIIAEKAGIAKYVDLITGLSVRDETDDATGMTQKIVTDWRSAPKGNELKPEIIIVDQDG
EPVRNEQGNPVTYPMSVEAILSVEEGQEIRAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAELDGYVRFGKDYKNKRRIAIQPADDTLEPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILRIMGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
ILDSGDTTLLKGEHVDRDEFEEENAKIEAKGGRPATGEPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVQGKRDKLVGLKENVIVGRLIPAGTGGATARVRRIASDRDHEVIEARRA
EAEAAAALIAPEDSPAEVGGED
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttgccaccaaccccctgaacccgctggctgcgccgcggcagttcgac
gaaatcaagatctcgctggcctcgcccgaggaaatcctcgcctggtcctatggcgaggtg
aagaagcccgagaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgc
gcgcgcatcttcggtccgatcaaggattacgaatgcctctgcggcaaatacaagcgcatg
aagtatcgcggcctggtctgcgagaaatgcggcgtcgaggtgacgctgcagaaggtccgg
cgcgagcgcatgggccatatcgaactggccgctccggtcgcgcatatctggttcctgaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgatcttgagcgcatc
ctgtatttcgagaactacgtcgtcatcgagccgggtctgaccgacctgtcctatggtcag
ctgctgaccgaggaggagttcctggacgcgcaggaccagtatggcgccgacgccttcacc
gccaatatcggcgccgaggcgatccgcgagatgctggccaatatcgatctggccgccacc
gccgaacagctgcgcgaggagctgaaagaggcgaccggcgagctgaagccgaagaagatc
atcaagcgtctgaagatcgtcgagagcttcctggaatcgggcaaccgtcccgaatggatg
gtgctgaccgtgatcccggtcattccgccggaactgcgtccgctggtgccgctggacggc
ggccgcttcgcgacctcggacctgaacgacctctatcgtcgcgtcatcaaccgcaacaac
cgcctgaagcggctgatcgagctgcgcgcgcccgacatcatcgtccgtaacgaaaagcgg
atgctgcaagagtcggtcgatgcgctgttcgacaacggccgccgcggccgcgtcatcacc
ggcaacaacaagcggccgctgaaatcgctgtcggacatgctgaagggcaagcagggccgg
ttccgccagaacctgctgggcaagcgcgtggacttctcgggccgttcggtgatcgtgacc
ggtcccgagctgaagctgcatcagtgcgggttgccgaagaaaatggcgctcgagctgttc
aagcccttcatctattcgcggcttgaggcgaaggggctttcgtccaccgtcaagcaggcg
aagaagctggtcgagaaggaacgccccgaggtctgggacatcctggacgaggtgatccgc
gagcatccggtgctgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttc
gagccgatcctgatcgagggcaaggcgatccagctgcatccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtccacgtcccgctctcgctggaagcccag
cttgaggcgcgcgtgctgatgatgtccacgaacaacgtgctgtcgcccgccaacggcgcg
ccgatcatcgtgccgtcgcaggacatggtccttggtctctattacacgaccatggagcgc
gagggcatgaagggcgaaggcatggtctttgccaacctcgaagaggtggagcacgcgctg
gcttccggcgcggtgcatctgcatgcccgcatcaccgcccgcctgccgcagatcgacgag
aacggcaacgaggtcatcaagcgtttcgagaccacgccgggccggatccggctgggcgcg
ctcttgcccaagaacgccaaggcgcccttcgagctggtgaaccgcctgctgcgcaagaag
gatatccagaacgtcatcgacaccgtctaccgctactgcggccagaaggaatcggtgatc
ttctgcgaccagatcatgggcctgggcttccgcgaggcgttccgcgccggcatctccttc
ggcaaggacgacatggtcgttccgccgacgaaatgggacctggtcgaggaaacccaggac
caggtgaagcagttcgagcagcaatacctggacgggctgatcacccagggcgagaaatac
aacaaggtcgtcgacgcctggtcgaaatgcaacgaccgcgtcaccgacgccatgatgaag
accatctcggccaccaagaaggacgagaacggcgccgagctggagccgaactcggtctac
atgatggcgcattcgggcgcgcggggctcggtcagccagatgaagcagctgggcggcatg
cgcgggttgatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcgcgcaagggtctg
tcggacaccgcgctcaagacggcgaactcgggctacctgacccgccgcctggtggacgtg
gcgcaggactgcatcatccgcgagcatgactgcggcaccgaccgggcgatcaccgcctcg
gcggcggtcaacgacggcgaggtggtcagcccgctttccgagcgcgtgctgggccgcgtc
gcggccgaggacgtgctggtgccgggcgaggacgtggtcatcgtgcgcaagaacgagctg
atcgacgagcgcaaggccgacgagatcgagggcgcgggcgtgcagaacgtgcgcatccgc
tcggccctgacctgcgagtcggacgacggtgtctgcgcgctctgctatggccgcgacctg
gcccgcggcacgctggtcaatatcggcgaggcggtcggcatcatcgccgcgcagtccatc
ggcgagccgggcacgcagctgacgatgcggaccttccacatcggcggcatcgcccagggc
ggccagcagtccttcatcgccgcggcgcaggagggcacggtggctttcgagaacgaaagc
acgctggaaaacgccaatggcgagctgatcgtgatgaaccgcaacatgcagctgcacatc
aagtcggcgacgggcgagacgctggccagccacaagctgttctacggcagcaagctgttc
gtgcgcgagggcgatgccgtggcgcgcggccagaagatgttcgaatgggatccctatacc
ctgccgatcatcgccgagaaggccggtatcgcgaaatatgtcgacctcattaccggcctt
tcggtccgggacgagaccgacgacgcgacgggcatgacgcagaagatcgtgacggactgg
cgctcggcccccaagggcaacgagctgaagcccgagatcatcatcgtcgaccaggatggc
gagccggtgcgcaacgaacagggcaacccggtcacctatccgatgtcggtcgaggcgatc
ctctcggtcgaggaaggccaagagatccgcgccggcgacgtggtggcgcgtatcccgcgt
gaaggcgccaagaccaaggacatcaccgggggtctgccccgcgtggcggaactgttcgag
gcccgtcgtcccaaggatcacgcgatcatcgccgaactggacggctatgtgcgcttcggc
aaggactacaagaacaagcgccgtatcgccatccagcccgccgacgacacgctggagccg
gtcgaatacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctgcgcatcatgggg
atcgaggccctggccgattacctgatcgacgaggtgcaggacgtctaccggctgcaaggc
gtgaagatcaacgacaagcacatcgaggtgatcgtccgccagatgctgcagaagatcgag
atcctcgacagcggcgacaccacgctgctgaagggcgagcatgtcgaccgcgacgagttc
gaggaggagaacgccaagatcgaagccaagggcggccgtccggccaccggcgagccggtg
ctcttgggcatcaccaaggcctcgctgcagacccgcagcttcatctcggccgcctcgttc
caggagacgacccgcgtgctgaccgaggccgccgtccagggcaagcgcgacaagctggtc
ggcctcaaggagaacgtgatcgtcggccggctgatcccggccggcaccggcggggccacg
gcccgcgtgcgccgcatcgccagcgatcgcgaccacgaggtgatcgaggcgcgccgggcc
gaggcggaagccgccgccgcgctgatcgcgccagaggacagcccggccgaggtcggcggc
gaggactga
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integrated database retrieval system
