Pectobacterium peruviense: DUT67_20860
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Entry
DUT67_20860 CDS
T10302
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DUT67_20860 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppeu03021
]
DUT67_20860 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppeu03400
]
DUT67_20860 (rpoB)
Enzymes [BR:
ppeu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DUT67_20860 (rpoB)
Transcription machinery [BR:
ppeu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DUT67_20860 (rpoB)
DNA repair and recombination proteins [BR:
ppeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DUT67_20860 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
XDF54601
LinkDB
All DBs
Position
complement(4630187..4634215)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKIYIEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSSDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKADIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRENVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFGRIHAVLVSGGVEAEKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQKAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgaattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggccagcacggtttggaagctgcattccgttctgttttcccaataaaa
agctatagcggtaattcagagctgcaatacgttagctatcgcttgggcgaaccagtattt
gacgttaaagaatgtcagatccgtggtgtgacgttctctgcgccgctacgcgttaaactg
cgtctggtgatttacgagcgtgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgactgataacggtaccttcgtgatcaacggt
actgagcgtgtgatcgtgtctcagttgcaccgtagtccaggtgtgttcttcgatagtgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggttggatttcgaatttgatccgaaggataacctgtttgtccgtatcgaccgt
cgccgcaaattgcctgcgaccattatcctgcgtgcgctgggttactccaccgaacagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataaattgcagatggat
ctggttcctgagcgcttacgtggtgaaaccgcgtcgtttgatatcgaagcgaatggtaaa
atttatatcgaaaaaggtcgccgcatcactgcacgtcatatccgtcagttagagaaagac
ggtattgagcgcattgaagtgcctgttgaatatatcgctggcaaagtactgtccaaagat
tatatcgacgagagcactggtgaactgatcggcgcagccaacatggagctgtcgctggat
ctgctggctaaactgagccagtctggtcacaaacgtattgagacactgttcaccaacgat
cttgatcacggtgcatacatgtctgaaaccgtgcgtgtcgatccgtcaagcgatcgtctg
agcgcgctggttgaaatctatcgcatgatgcgtcctggtgagccaccaacgcgtgaagca
gcagaaacgctgttcgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggccgtatgaagttcaaccgttctttgttgcgtgacgagatcgaaggttccggtatcctg
agcaaagctgacatcatcgaagtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgcgctgtaaaagagcgtctgtct
ctgggtgacctcgatacgctgatgccgcaggacatgattaacgccaagccgatttcggct
gctgtgaaagagttcttcggttcgagccagctgtcacagtttatggaccagaacaacccg
ttgtctgagattacgcacaaacgtcgtatctctgcattgggtccaggtggtctgacgcgt
gaacgtgctggctttgaagttcgtgacgtacacccgactcactatggtcgtgtttgtcct
atcgaaacgccagaaggtccgaacattggtctgatcaactccctgtccgtttatgcgcaa
acgaacgaatacggtttccttgaaaccccatatcgtcgcgtgcgtgaaaacgtggttacg
gatgagattcattacctgtctgcgattgaggaaggtaacttcgttatcgcacaggcaaac
accaatttagacgaagaaggtcgcttcatcgacgaactggttacctgccgtaacaaagga
gagtccagcttgttcagccgtgatcaggttgaatatatggatgtttccacacagcagata
gtttccgtcggtgcgtccctgattccgttcctggaacacgatgacgccaaccgtgccctg
atgggtgcgaacatgcaacgtcaagccgttcctaccttacgcgctgataagccgctggtt
ggtacgggtatggaacgcgctgttgcggttgactccggtgtaactgcagtagcaaaacgt
ggtggtacagtacagtacgtggatgcatctcgtattgtaatccgcgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtgtctctgggtgaaccagtagaacgtggt
gacgttctggcagatggcccgtccaccgatctgggtgagctggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagatcgctttacgaccattcacatccaggaactggcctgtgtgtct
cgtgacaccaagttagggcctgaagaaattactgcggacatcccgaacgtgggtgaagca
gcactttctaaactggatgagtctggcatcgtttatatcggtgcggaagtgaccggtggt
gacattctggttggtaaagtgacgccgaaaggtgaaacccaactgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaggtctttacccgcgacggcgtggaa
aaagacaaacgtgcgttggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagagttgcagattctggaagcgggcctgtttggacgtatccacgcagtgctggtt
tctggcggcgtagaagctgaaaaactggacaaactgccgcgcgagcgctggttggaactg
ggtctgactgatgaagataaacagaatcagttggaacagcttgcagaacagtatgatgag
ctgaagcacgagttcgagaaaaaactcgaagctaagcgccgtaaaatcacccaaggcgat
gatctggcaccgggcgtgctgaaaatcgttaaggtttatctggctgttaagcgtcagatc
caaccgggtgacaagatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggtgtaccttcacgtatgaacatcggtcagattctggaaacccacttgggtatggca
gcaaaaggtatcggcgagaaaatcaacgccatgcttaagcagcacgaagaagtgactaaa
ctgcgtgaatttatccagaaagcctatgatctgggcgacgatgtgcgtcaaaaagtcgac
ctgagtactttttccgacgaagaagttatgcgtctggctgaaaacctgaagaagggtatg
ccaattgcaacgccggtattcgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattactctgtacgatggacgtactggtgagcaa
tttgagcgtcaggttacagtgggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgcccgttccaccggttcttatagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcttataccctgcaagaaatgttgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataaaaacatcgtggatggcaatcatcagatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgttcgctgggtatcaacatcgagctggaa
gaaaagtaa
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