Pelodictyon phaeoclathratiforme: Ppha_1207
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Entry
Ppha_1207 CDS
T00731
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph02020
Two-component system
pph02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Ppha_1207
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Ppha_1207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pph03021
]
Ppha_1207
Transcription machinery [BR:
pph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ppha_1207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ACF43479
UniProt:
B4SGR6
LinkDB
All DBs
Position
1261735..1263183
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AA seq
482 aa
AA seq
DB search
MADIRLQQRQSLQLSAQQILSSQLLQLPMLNLEQRIYEELQENPLLEVVEESKESVGEVV
AGSDGSNGDDMFDAVERFSKSALKERSDAPFSVEDSEGRLNFTYEGGSKERFFQAVQHDS
FHDTLLRQLTLHEEVGEREARIAAEILGNLDGDGYFGEDYGVIVDSLHFDGLDISQREVE
EVVRKIHFLDPPGIAVKDLRERFLVQLQAGSERYPSKTYEVATRILRDHFDDFLHRRFEL
LLKKLAETKEGVEAAVSAIIRLDPHPGIFQDEGGYITPDFLVSYENGALIAVLNDRSALS
VKVTDRYQELLKNRKAPKEEKQFIRKNILRANEFTSAIETRRQTLLKVIEALMKRQYGFF
VFGPERVVPLGMKTIAADTDLDISTISRAVNGKYVQTRFGVFELKYFFSTGLSTGEGEDL
SSKVIRQQIADMISGEDSANPLSDESITEMLMKCGIHIARRTVAKYREQMQIPVARLRKK
IF
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctgatatccggcttcaacaaagacaatcattacagctctctgcacagcagatttta
agcagtcagctccttcagcttccgatgctcaaccttgaacagcgtatttatgaggagtta
caggaaaatccgttacttgaagtagttgaagaaagtaaggagagtgtcggtgaagtcgtt
gcaggcagtgacgggtcgaatggtgacgatatgttcgatgcggttgaacgcttcagtaaa
agtgcactcaaggagcgctccgatgcgccattttctgtcgaagattctgaaggaaggctc
aacttcacctatgaaggcggctcaaaggagaggttctttcaggccgttcagcatgacagt
ttccatgataccctgctccggcagttaacattacatgaagaggtcggggagcgggaggca
aggattgcggccgagattcttggtaatcttgacggcgacggttattttggcgaggactat
ggagtgattgttgacagtctgcactttgatggccttgatatcagccagagggaagtcgag
gaagttgtgcgcaaaattcattttcttgatcctcctggtattgccgtcaaagatttgcgt
gagcggtttcttgttcaactgcaggccggttcggagcgttatccatcaaagacgtatgag
gttgcgacacggattcttcgtgatcattttgatgattttctgcacaggcgctttgaactg
ttgctgaaaaaacttgctgagacaaaagagggcgttgaagcggctgtttcggccatcatc
cggcttgatcctcatcccggcatttttcaggatgagggtggatatattacgccggacttt
cttgtgagctatgagaatggtgcattgattgcagtgctcaatgacagaagcgcactttct
gtcaaggttaccgaccgttatcaggaacttctgaaaaacaggaaagctccaaaagaagaa
aagcagtttatacggaaaaatattctgcgggccaatgagtttacaagcgccattgagacc
aggcgccagacgctgctgaaggtgattgaagcgttgatgaaacggcaatatggctttttt
gtttttggccccgaacgtgtggtgccacttggcatgaaaactattgctgccgataccgat
cttgatatatcgacgatcagtcgggccgtcaatggaaaatatgtacagacccgctttggc
gtttttgagctgaaatattttttcagcacaggactttcgaccggggagggtgaagatctg
tcaagcaaggttattcgtcagcaaattgctgatatgatcagcggggaggattccgcaaat
cccctgagtgatgagagtataacggagatgcttatgaaatgtggaatacatattgcaaga
agaacggttgcaaaatatcgggaacaaatgcagattccagttgcaagattaagaaaaaaa
atattttga
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