Phocoena phocoena (harbor porpoise): 136133697
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Entry
136133697 CDS
T11058
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
136133697 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136133697 (POLR1A)
Enzymes [BR:
pphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
136133697 (POLR1A)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
136133697 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF7736
Motif
Other DBs
NCBI-GeneID:
136133697
NCBI-ProteinID:
XP_065747048
LinkDB
All DBs
Position
14:13893087..13968412
Genome browser
AA seq
1716 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLFFEKLYLLLRGSCLNCHMLTCPRAVIHLL
LCQLRVLEVGALQAVYELERIQCRFLEENADPTAFEIQEELERYTTKILQNNLLGAHGAR
VKNVCESRSKLIAFFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRKADQKDT
EPQGIEEAQMGKRGYLTPTSAQEHLTALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLD
FLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPREVAAPAT
DEEKDPSIAMDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPSVHPGASMVINEDGSRTALSASNLTQREAVAKQLLTPAMGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFSREQYMELVYRG
LTDRVGRVKLFPPAILKPCPLWTGKQVVSTLLINVIPEDHVPLNLSGKAKIGGKAWVKES
PRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTHCGPQAVRAALNLPEAASCD
EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRPFPENNLHMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PAEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNCEVIMKSKHLHEVLSRADPQKALRHFKAIKKWQSKHS
NTLLRKGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQMLRMWAELDEQSRRKYQKKAS
PCPDPSLSVWRPDTYFASVSETFEKKVDDYSREWAAQAERSYEKAELSLDRLRTLLRLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPTMSVPVFNTKKALKKVKSLKKQLTRVCLGEVLEKIDVQESFSMGEKQNKFRVYELRFQ
FLPHAYYQQEKCLRPGDILHFMETRFFKILMESIRKKNSKASAFRSVNTRRATQQDLDNE
GESERSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEDGEDGEDGED
LQEEGTVLGEGTPQAQAQEEEGGSGPEEDSLPAAPLAQPWKPTRSREPQDAEAVERRVRA
VRECHPFIEDYQYDTQGGLWCQVMVKLPLIKVNFDMSSLVVSLAQGAVVYATKGITRCLL
NETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKE
IKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQA
TMMGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgttgggatcaaagaacatgccctggcggcggctgcagggcatttctttcgggatgtat
tcggccgaagagctcaagaaattaagtgttaagtccattacaaaccctcggtacctagat
agcctggggaacccgtcggtgaacggcctgtacgatctagctctgggccccgcagactcc
aaagaggtgtgctccacctgcgtgcaggacttcagcaactgctccgggcacctgggccac
atcgagctcccgctcactgtgtacaaccctctcttctttgagaaactctacctgctgctc
cggggttcctgtttaaactgtcacatgctgacttgcccccgggctgtgattcacctgctg
ctctgccagctgagagttctggaagtcggggccctacaagcagtgtacgagttggagaga
attcagtgcaggtttctggaagaaaatgctgatcctactgccttcgaaattcaggaagag
ttagaacgatatacaaccaaaatcctacagaacaacctcctgggagcccacggcgcacgt
gtaaaaaatgtctgtgagagcagaagcaaacttattgctttcttctggaaggcacatatg
actgctaagcgatgtccccactgcaaaaccgggcggtcagttgtccgaaaggagcacaac
agcaaactgacaatcacgtatccggccatggtgcacaggaaagctgaccagaaggacact
gagccccagggaattgaggaagctcagatgggaaaacgaggatacttgacacccaccagc
gctcaagaacatctcacggctctttggaagaatgaaggattctttctgaattaccttttt
ctgggactggaagatgttggcatggagtccagattcaatcccagtatgttctttctggat
ttcttggtggtgccaccctcaaggtatcgccctgtcagccgcctcggggaccagatgttc
accaacggccagacggtgaacctgcaggctgtcatgaaggatgtggttctgatccgaaag
cttctggccttgatggcccaagaacaggagctgccaagagaggtggcagcacccgccaca
gatgaggaaaaagacccttcgatcgctatggaccggtcctttctgagtctacttccaggc
cagtccctcacagacaaactttacaacatttggattcgccttcagagccacgtcaatatt
gtgtttgatagtgagatggacaaattaatgatggaaaagtaccctggcatcagacagatc
ctggagaagaaggatggtctgttccggaagcacatgatgggaaagcgagtagattatgca
gcccgctcagtcatctgcccggacatgtacatcaacaccaatgaaattggaattcccatg
gtgtttgccacaaagctgacctaccctcagccagtcaccccctggaacgttcaggaactg
aggcaggcggtcatcaacggccccagtgtgcacccaggagcctccatggtcatcaatgag
gatggtagccgcacggccctgagtgcctcgaacctaacccagcgggaggctgtggccaaa
cagctcctgacaccagccatgggggcacctaagccccaggggacaaaaattgtgtgccgg
cacgtgaagaatggggacattctcctcctgaaccgacagcccaccctgcacaggccctcc
atccaggcgcatcgcgcccgcatcctgcccgaggagaaagtcctgcggctccactatgcc
aactgcaaggcctacaacgccgactttgatggagacgagatgaacgcccacttccctcag
agtgaactgggccgggccgaggcctacgtcctggcctgcacagatcagcagtaccttgtt
cccaaggatggccagccattggcagggctgatccaagatcacatggtttcgggtgcaaac
atgaccattcgaggctgctttttcagccgggagcagtatatggagctggtgtaccgagga
ctcacagacagagtgggacgtgtgaagctctttcctcctgccatcctgaagccctgtccg
ctgtggacaggaaagcaggttgtgtccacgctgctcatcaacgtaatcccagaggatcac
gtcccactgaacttgtcaggaaaggcgaagattggcgggaaggcctgggtgaaggagtct
cctcggcccgttcccggctttaaccccgactccatgtgcgagtcccaggtgatcatcagg
gaaggggagctgctctgcggggtgctggacaaggcgcattacgggagctccgcctacggc
ctggtccactgctgctacgagatctacggcggggagaccagcggcaaggttctcacctgc
ctggcccgcctcttcaccgcctacctgcagctctacagaggcttcactttgggcgtggaa
gacattttggtcaagccgaaggcagatgtcaggagacacaggatcattgaagagtccacc
cactgtgggccccaggctgtcagggctgcgttaaaccttccagaagcagcatcgtgtgat
gaggtccgagggaagtggcaggatgcccatctgggcaaagaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaatcattacagcaatgaaattaacaaggcatgc
atgcctttcggcctgcacagaccgttcccagagaacaacttgcatatgatggtgcagtct
ggagccaaaggttcaactgtgaataccatgcagatctcgtgcctgctgggccagatcgaa
ctggaaggccggagacccccactgatggcatctggcaagtcactgccctgcttcgagccg
tatgagttcacccccagggctggcggcttcgtcactggcagattcctcaccggcatcaag
cctgctgagttcttcttccactgcatggccgggcgagagggtctggtggacacggctgtg
aagaccagccgctctggctacctccaaaggtgcgtcatcaagcacctggaggggctggtc
gtccagtatgacctgacagtccgcgacagcgacggcagcgtggtgcagttcctgtatgga
gaggacggcctggacatccccaagacacagttcctgcagcccaagcagttccccttcctc
gccagcaactgtgaggtgataatgaaatcgaagcacctccatgaagttttatccagagca
gatccccagaaagctctccgccacttcaaagccatcaaaaaatggcaaagcaagcattcc
aacaccctgctgagaaaaggcgccttcttgaattattcccagaaaattcaagcagctgtg
aaagccttgaacctcgagggcgcaaaccagaacggccgcagccctgagactcaccagatg
ttgaggatgtgggctgagttagatgagcagagccggaggaaataccagaagaaggcgtct
ccttgtcctgaccccagtctgtctgtctggcgcccagacacctactttgcatcagtgtca
gaaacatttgaaaagaaggtggatgactacagtcgcgagtgggcagctcaagcagagagg
agttacgagaaagcggagctctctctggaccggctgaggactcttctgcggctgaagtgg
cagcgctcgctgtgtgacccgggagaggccgtgggcctgttggccgcacagagcatcggg
gagccctccacacagatgaccctgaacaccttccactttgccggcagaggcgagatgaat
gtcaccctgggcattcccaggttgagggagattctcatggtggccagcgccaacatcaag
acgcccacgatgagcgtgcccgtgttcaacaccaagaaagcgctgaagaaagtgaaaagc
ctgaagaagcagctcaccagggtgtgcctcggggaggtgttggagaaaattgatgtccag
gagtccttctctatgggggagaaacagaacaagttccgggtgtacgagctgcggtttcag
ttcctgccacacgcgtactaccagcaggaaaagtgcctgagacccggggacatcctgcat
ttcatggaaacaagattctttaaaattctgatggaatccatcagaaagaagaatagtaaa
gcatcagctttcagaagcgtaaacacgcggagagctacccagcaggatctagacaacgaa
ggcgagtcggagaggagtcggggagagcaggaaggcgacgaggaagaggaggggcacatc
gtggatgccgaagctgaggagggagacgctgatgcctcggacgccaaacgcaaggagaaa
caagaggaggaggtcgactacgagagcgaggacggtgaagacggcgaggacggcgaggac
ctgcaggaggaagggactgtcctcggggaaggcactccccaggcccaggcgcaggaggag
gaggggggctcaggccccgaggaggactcgctccccgccgccccactggcacagccgtgg
aagcccacccgcagccgggagccccaggacgccgaggcggtggagcgccgggtgcgggcc
gtgcgcgagtgccacccgttcatcgaggactaccagtacgacacccagggcggcctgtgg
tgccaggtgatggtgaaactccctctcatcaaggtcaactttgacatgagctccctggta
gtgtccctggcccaaggcgccgtcgtctacgcgaccaagggcatcaccagatgcctcctg
aacgaaaccaccaacagtaagaacgagaaggagctcgtcttaaacacagaaggcatcaac
ctcccggagctgttcaagtacgccgaggtcctggatttgcgtcgcctctattccaacgac
atccatgccatggccagcacgtacggcatcgaggccgcgctgcgggtgatcgagaaggag
atcaaggatgtgttcgccgtgtacggcatcgccgttgacccccgccatctctccctggtc
gctgactacatgtgcttcgagggtgtttacaagccactgaaccgctttgggatccggtcg
aactcctccccactgcagcagatgacgtttgagaccagcttccagtttctgaagcaggcc
accatgatgggatcccacgatgagctgaggtcgccgtcagcctgcctcgtggttgggaag
gtcgtcaagggcgggacaggcctcttcgagctcaagcagcccctgagatag
DBGET
integrated database retrieval system
