Pseudoalteromonas phenolica: PP2015_195
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Entry
PP2015_195 CDS
T04165
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pphe
Pseudoalteromonas phenolica
Pathway
pphe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PP2015_195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphe03021
]
PP2015_195
03400 DNA repair and recombination proteins [BR:
pphe03400
]
PP2015_195
Enzymes [BR:
pphe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PP2015_195
Transcription machinery [BR:
pphe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PP2015_195
DNA repair and recombination proteins [BR:
pphe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PP2015_195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ALO40723
UniProt:
A0A0S2JY49
LinkDB
All DBs
Position
I:213855..217880
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLNPDAVGDYGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVLMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKSHSSGKVLYNARVIPYRG
SWLDFEFDVKDNLYVRIDRRRKLPASIILRALEFTSEEILAMFFETTTFEVANGKVLMEL
VPSRLRGETAAFDIKDKDGDVIVEAGRRVTARHIKTLEKKEITQLEVPHEYIIGRVVAKN
YIDESTGEIIAEANAELSLELMAELVKAGHAQIDTLYINDVDSGAYISDTLRIDSSTNRL
EALVEIYRMMRPGEPPTKDAAEALFENLFFTEERYDLSTVGRMKFNSRVGYDSDTGPGTL
SKEDIVSVMKVLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVS
DEVDYLSAIEEGQFVIAQANTNLNDSNEFIDELIPCRHKGESTFMGRDDIQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTLAKDSGVTIVAKR
GGVVKYADASRIVVNVNEEERIPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVVRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSENVVKEDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEEMQLREAKKDF
NEEFRILEGGILTRVRTLLVQAGLSEEKVAELSTDKLLTQSLADEQQQADLEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGETLEEMMKEQREIHE
MRDFIAKAYAVGDCRQKVDIASFSDDEVRRLANNLKGGLPIATPAFDGARESEIKDLLEL
GGYPRSGQVTLYDGRTGDAFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatatacctttcttactgtctacacagttagaatcgttcaaaaaattcttgaat
cctgacgctgtaggcgactatggactggaagctgcattccgctctgttttccctattaaa
agctactcgggtaattctgagctccaatacgtaagttaccgtattggcgagccagtattc
gatgtaaaagaatgtcaaattcgcggcgtgacttattctgctccacttcgcgtgaaatta
cgtcttgtgctaatggataaagaagcaccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaatcccgctcatgaccgataccggtacttttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgttcacctggtgtattctttgataacgaccgt
ggtaagtcacactcttcaggtaaagtactttataacgcacgtgttattccttaccgtggt
tcatggttagactttgaatttgatgtaaaagataacctttatgtacgtatcgaccgccgt
cgtaagttaccggcgtctattattctacgtgctttagagtttacatctgaagagatctta
gcaatgttcttcgaaacgacaacgttcgaagttgctaacggtaaagtattaatggagctt
gttccttcacgtctccgtggtgaaacagctgcatttgatattaaagacaaagacggtgac
gtgatcgttgaagccggtcgtcgtgttactgctcgtcatatcaagactcttgaaaagaaa
gaaattacacaacttgaagtaccacacgagtacatcattggtcgtgtagtagctaaaaac
tacatcgatgagtcgactggtgaaatcatcgcagaagcgaatgctgaactttcactagag
ctaatggctgagcttgttaaagcaggtcacgcacaaatcgacacactttacatcaatgat
gtagacagtggtgcatacatttcagatacactacgtatcgattcttctacaaaccgttta
gaagcgcttgtagaaatctaccgtatgatgcgccctggtgagccaccaacgaaagacgct
gcagaagctttattcgaaaatttattcttcactgaagagcgttatgacctatcaactgta
ggtcgtatgaagttcaatagccgtgtaggttatgattcagatacaggcccaggtacactg
agcaaagaagacatcgtttcagtaatgaaagtattgatcgatattcgtaacggtaaaggc
gaagtggacgatatcgaccacctaggtaaccgtcgtatccgttctgtaggtgaaatggct
gaaaaccaattccgtgttggtttagttcgtgttgaacgtgctgttcgtgagcgtttaagc
ttaggtgatcttgacaatgtaatgcctcaagacctaatcaacgcaaaacctatttcagca
gcagttaaagaattctttggttcttcacagctgtcacagttcatggaccaaaacaacccg
ctttcagaagtaacgcacaagcgtcgtatttctgcattaggtccgggtggtcttacacgt
gaacgtgcaggcttcgaagttcgagacgtacacgtaacacactacggtcgtgtttgtcct
atcgaaacacctgaaggtccaaacatcggtctaatcaactcactttctacatacgcacgt
actaacgattatggtttcttagaaacaccatatcgtaaagttgttgatggtgtagtaagc
gatgaagttgattacctatcagctatcgaagaaggccaattcgtaatcgcacaggcgaac
acgaacctgaacgacagcaatgaatttattgatgagttaatcccatgtcgtcacaaaggt
gaatcgacatttatgggtcgtgatgacatccaatatatggacgtatcacctcaacaggtt
atctcagttgcagcagcactaatcccattcctagaacacgatgatgctaaccgtgcacta
atgggatcgaacatgcaacgtcaagcagtaccaacactacgcgctgataagccgttagta
ggtacaggtatcgagcgtacactagcaaaagattctggtgtaacaatcgttgctaagcgt
ggcggtgttgttaaatatgctgacgcaagccgtatcgtagttaacgtaaatgaagaagag
cgcatcccaggtgaagcgggtatcgacatttacaacttaactaaatatacacgttctaac
caaaacacgtgtatcaaccagaaacctacctgtatggttggtgagccggttgtacgtggt
gacgtattagcagatggtccttcgactgacttaggtgacttagcactaggtcaaaacctt
cgcgtggcattcatgccatggaatggttataacttcgaggattcaatcttactatctgag
aacgttgtaaaagaagatcgtctaacaacaatccacatccaagaacttcagtgtatcgca
cgtgatactaagcttggtcctgaagagatcacagctgatattccaaatgtaggtgagtct
gcacttggtaaactggatgagtctggtgttgtttacatcggtgcagaagtaaaaggtggc
gacatccttgtaggtaaagtaacacctaaaggcgaaacgcaacttactcctgaagaaaag
ctactacgtgctatcttcggtgaaaaagcatctgatgttaaagacagctcactacgcgta
ccaaactctgtaactggtactgtcattgacgtacaagtattcactcgtgacggcgttgaa
aaagacaagcgtgcgttagaagttgaagaaatgcagcttcgtgaagcgaagaaagacttt
aacgaagagttcagaatccttgaaggcggtatcttaacacgcgtacgtacattactagta
caagcgggtctaagtgaagagaaagtagctgaattaagcactgacaagctactaactcag
agccttgctgatgaacagcaacaagctgatcttgagcaactagctgcacagtacgatgag
cttaaagctgagtacgacaagaagtttgaaaacaaacgtcgcaagatcactcaaggtgat
gacttagcaccaggcgtacttaagattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataagatggctggtcgtcacggtaacaaaggtgttatctcgacaatcgta
ccagtagaagatatgccatacgatgataaaggtcgtacagtagatatcgtacttaacccg
ctgggtgtaccatctcgtatgaacatcggtcagatcttagaaacacacatgggtctggct
gcacgtggtatcggtgaaacgctagaagagatgatgaaagagcagcgtgaaattcacgaa
atgcgcgatttcattgcaaaagcttacgcagtaggtgattgccgtcagaaagttgatatt
gctagcttctctgatgatgaagttcgtcgtcttgcgaacaacctgaaaggtggtctacct
atcgcgactccagcattcgatggtgctcgtgaatcagagattaaagaccttcttgagcta
ggtggttacccacgtagcggtcaggtaacgctatatgatggtcgtactggtgatgcgttt
gagcgtcaagtaaccgttggttacatgtatatgctgaaactaaaccacttagtagacgac
aagatgcacgcgcgttctactggttcttacagcctagtaactcagcagccgctgggtggt
aaggcacagttcggtggtcagagattcggtgagatggaggtatgggcattagaagcatac
ggtgctgcctatacacttcaagagatgctgacagttaagtcagatgacgtaaatggtcgt
actaagatgtataagaacatcgttgatggtaaccacaagatggaaccaggtatgccagag
tcattcaacgtattgttgaaagaaatccgctcactaggtatcaacatcgagttggaagaa
aattaa
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