Pengzhenrongella phosphoraccumulans: VTA80_12290
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Entry
VTA80_12290 CDS
T10828
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pphp Pengzhenrongella phosphoraccumulans
Pathway
pphp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VTA80_12290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphp03021
]
VTA80_12290 (rpoB)
03400 DNA repair and recombination proteins [BR:
pphp03400
]
VTA80_12290 (rpoB)
Enzymes [BR:
pphp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VTA80_12290 (rpoB)
Transcription machinery [BR:
pphp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VTA80_12290 (rpoB)
DNA repair and recombination proteins [BR:
pphp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VTA80_12290 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WVT78352
LinkDB
All DBs
Position
2661870..2665376
Genome browser
AA seq
1168 aa
AA seq
DB search
MAASRIPSAPSVDAIANRTASRRISFAKIREPLEVPDLLGLQTENFDWLLGNDKWQARVA
SAVETGRQDVPETAGLEEIFEEISPIEDFGGSMSLSFREHRFEPSKYTAEECKEKDFTYA
APLFVTAEFVNYTTGEIKSQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFERT
ADKTSDKDIFTAKIIPSRGAWLEFEIDKRDAVGVRVDRKRKQSVTVLLKALGLSESQIRE
EFAQFPAVIDTLEKDHVSTEDEALLDLYRKIRPGEPPTIEAGRALLENFYFNPKRYDMAK
VGRYKVNKKLGVDAPLSESVLAVRDIVATIKYLAALHADVATLPGTRAGEAVEIRVETDD
IDHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKE
FFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETP
EGPNIGLIGSLATYGRINPFGFIETPYRKVIKGKVTDDVHYLTADDEDRYVIAQANAPLK
PTGSFAEATVLVRTKGGEVEVVPGEDVDYMDVSPRQMVSVATALIPFLEHDDANRALMGA
NMQRQAVPLVRSEAPVVGTGMERRAAIDAGDVIVASKPGVVTEVSADLIVISNDDGTTTS
HRVAKFRRSNQGTCYNQRVLVDDGARVEKGSVLADGPATDEGELSLGRNLLVAFMSWEGH
NYEDAIILSERLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGI
IRIGAEVGAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGTVIE
VRTFNREDGDELPAGVNELVRVYIAQRRKITVGDKLAGRHGNKGVISKILPIEDMPFLPD
GTAVDIILNPLGVPGRMNVGQVLETHLGWVAKQGWDVTLAEGEPSWKKNVPAIASKSLPG
VPVATPVFDGVQEDALTGLLSVTLPNRDGVRMVDGTGKARLFDGRSGEPFPEPVAVGYMY
ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELL
TIKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLLKEMQSLCLNVEVLSSDGVSIDMKE
NDDEVYRAAEELGIDLSRRPNASSVEEI
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcatcccttctgctccgtccgtcgacgctatcgcgaatcgcacagcg
tcccgccgaatctcgttcgcaaagatccgtgagccgctcgaggttccggacttgctcggg
cttcagacggagaatttcgactggttgctcggtaacgacaagtggcaggcgcgcgtcgcc
tccgccgtcgagaccggccgccaggacgttcccgagaccgcaggcctcgaggagatcttc
gaagagatctccccgatcgaggacttcggtggctcgatgtcattgtctttccgcgagcac
cgtttcgagccgtcgaagtacacggccgaggagtgcaaggagaaggacttcacctacgcc
gcgccgctgttcgtcacggccgagttcgtgaactacaccaccggtgagatcaagagccag
accgtgttcatgggcgacttcccgctcatgaccgagcgtggcacgttcatcatcaacggc
acggagcgcgtcgtcgtctcccagctcgtgcggtccccgggcgtgtacttcgagcgcacc
gccgacaagacgtccgacaaggacatcttcaccgccaagatcatcccgagccgcggtgcc
tggctcgagttcgagatcgacaagcgcgacgccgtcggcgtgcgcgtcgaccgcaagcgc
aagcagtcggtgaccgtgctgctcaaggccctcggcctgagcgagtcgcagatccgcgaa
gagttcgcccagttcccggccgtcatcgacaccctcgagaaggaccacgtctcgaccgag
gacgaggccctgctcgacctgtaccggaagatccgcccgggcgagccgccgacgatcgag
gccggccgcgccctgctcgagaacttctacttcaaccccaagcgctacgacatggccaag
gtcgggcgttacaaggtcaacaagaagctcggtgtcgacgcgcccctgagcgagtccgtc
ctcgccgtccgggacatcgtcgcgaccatcaagtacctcgccgccctgcacgccgacgtc
gcgaccctgccgggcacgcgcgccggtgaggccgtcgagatccgcgtcgagaccgacgac
atcgaccacttcggcaaccgtcgcatccgcgcggtcggtgagctgatccagaaccaggtc
cgcaccggcctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacgtc
gaggcgatcaccccgcagaccctgatcaacatccgccccgtggtggcgtcgatcaaggag
ttcttcggaacctcgcagctgtcgcagttcatggaccagaacaacccgctcgcggggctc
acacacaagcggcgcctgtccgcgctcggcccgggtggtctgtcccgcgaccgcgccggc
atggaggtccgcgacgtccacccctcgcactacggccgcatgtgcccgatcgagacccct
gagggcccgaacatcggcctcatcggctcgctcgcgacgtacggacggatcaacccgttc
ggcttcatcgagacgccgtaccgcaaggtcatcaagggcaaggtcacggacgacgtccac
tacctcacggccgacgacgaggaccggtacgtcatcgcgcaggccaacgccccgctgaag
cccacgggctcgttcgccgaggcgaccgtcctggtccgcaccaagggcggcgaggtcgag
gtcgtccccggtgaggacgtcgactacatggacgtctcgccgcgccagatggtctccgtc
gcgacggcgctcatcccgttcctcgagcacgacgacgccaaccgcgcgctcatgggcgcg
aacatgcagcgtcaggccgtgccgctggtgcggtccgaggcgcccgtggtcggtacgggc
atggagcgccgtgcggcgatcgacgccggggacgtcatcgtggcctcgaagcccggtgtc
gtcaccgaggtctccgccgacctcatcgtcatctccaacgacgacggcaccacgacgagc
caccgggtcgccaagttccgccgctcgaaccagggcacgtgctacaaccagcgcgtcctg
gtcgacgacggcgcccgcgtcgagaagggttccgtgctcgccgacggacccgcgacggac
gagggcgagctttccctcggtcgcaacctgctcgtggcgttcatgtcctgggaagggcac
aactacgaggacgcgatcatcctcagcgagcgcctggtgcaggacgacgtcctgtcctcg
atccacatcgaggagcacgaggtagacgcccgcgacacgaagctcgggccggaggagatc
acgcgggacatcccgaacgtctccgaggaggtccttgcggacctcgacgagcgcgggatc
atccgcatcggtgccgaggtcggcgccggtgacatcctcgtcggcaaggtcacgcccaag
ggcgagaccgagctcaccccggaggagcgcctgctccgggcgatcttcggcgagaaggcc
cgcgaggttcgcgacacgtcgctcaaggttccccacggcgagtccggcacggtcatcgag
gtccgaacgttcaaccgcgaggacggcgacgagcttcctgccggcgtcaacgagctggtc
cgggtctacatcgcccagcgacgcaagatcaccgtcggtgacaagctggccggtcgtcac
ggtaacaagggcgtcatctccaagatccttccgatcgaggacatgccgttcctgcccgac
ggcaccgccgtggacatcatcctcaacccgctcggtgtgcccggccgtatgaacgtcggc
caggtcctcgagacccacctcgggtgggtcgccaagcagggctgggacgtcacgcttgct
gagggtgagccgtcctggaagaagaacgtgccggcgatcgcctcgaagtcgctcccgggt
gtcccggtcgcgaccccggtgttcgacggcgtccaggaggatgccctcacgggtctgctc
tcggtcacgctcccgaaccgcgacggcgtccgcatggtcgacggcacgggcaaggcgcgg
ctgttcgacggtcgctccggcgagccgttcccggagccggtcgcggtcggctacatgtac
atcctcaagctgcaccacctcgtcgacgacaagatccacgcacgctccacgggtccgtac
tcgatgatcacgcagcagccgctgggtggtaaggcgcagttcggtggacagcggttcggc
gagatggaggtctgggcactcgaggcgtacggcgccgcgtacacgctccaggagctcctg
acgatcaagtcggacgacgtccccggacgcgtcaaggtctacgaggcgatcgtcaagggc
gagaacatccccgactcgggcatcccggagtcgttcaaggtgctcctcaaggagatgcag
tcgctctgcctgaatgtggaggtgctgtcctcggacggcgtctcgatcgacatgaaggag
aacgacgacgaggtctaccgcgcagcggaagagctcggcatcgacctttcgcgccggccc
aacgcctccagcgtcgaagagatctga
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integrated database retrieval system
