Pseudomonas putida ND6: YSA_01924
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Entry
YSA_01924 CDS
T02170
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSA_01924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppi03019
]
YSA_01924
03009 Ribosome biogenesis [BR:
ppi03009
]
YSA_01924
Enzymes [BR:
ppi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
YSA_01924
Messenger RNA biogenesis [BR:
ppi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YSA_01924
Ribosome biogenesis [BR:
ppi03009
]
Prokaryotic type
rRNA processing factors
YSA_01924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFK67818
UniProt:
I3UQP7
LinkDB
All DBs
Position
1028571..1031807
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AA seq
1078 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAA
EEPQPAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVPAAEKPAAERSPRNEE
RRNGRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAP
REERTPRQPREDRRSNRGEERVRELREPLDVTPPAEREERQPREERVAREERAPREERAP
REERAPREERAPREERAPREERALREERAPREERAPREERAPREERAPRPPREERQPRAA
EEATEQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDG
SEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATAEVAAVA
ETDNSEAAQPVEQAEAVTKAEEASVAPAVEQPVTEPVAAAEATAEPVVEMAPQPVAEDAP
AAEPAVVAETVVTETPAEAPAVEAGEIEQAPAVVEVAPVAAQPAPVVEAQPEVVAEPAPA
VVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAASQEPALETADEHKPHHG
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttc
ggttccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgagtacttcaagaag
gccccagaaggccgggtcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtt
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgtgccggtggcatctcgcgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctgaacggcctgaccgtaccgggt
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctggattacctgctgcagctgtggaccgccatcaaggaagcgtccctggaccgcgcc
gcgccattcctgatctaccaggaaagcaacgttatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagcgctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gacctgccgtccggcggttcgatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgttgaagagcgcgtt
cgtgaatgcctggaagccgaccgcgcccgcgtgcaggtaggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccatcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtacgtgctcaagtg
ccgatcccggtagccgcgttcctgctgaacgaaaagcgtaactcgatcaccaagatcgag
ctgcgcacccgtgcgcgcatcatcatcctgccgaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaaccctgaagtgctgaacaaccagtccagctacgaa
atcgccgccgccgaagctgaagaagcgccgcagccgaccgccacccgcaccctggtacgc
caggaagccgcagtgaagacggccccggcccgcgccaacgcaccggtaccggccgccgct
gaagagccccagcctgccgccccggtcgcccctgccccgagcgctccggagccaagcctg
ttcaaaggcctggtgaagtcgctggtgagcctgttcgccggcaaggacgagcctgccgcc
gcgccagtggtgcccgccgccgaaaaaccggctgccgagcgcagcccgcgtaacgaagaa
cgccgcaacggccgccagcaaagccgcaaccgcaacggccgccgcgacgaagaacgcaaa
ccgcgtgaagagcgtgccgagcgcgcaccgcgcgaggaacgcgccccacgcgaagaacgt
gcaccgcgtgaggaacgtgccccacgcgaagaacgtgcgccgcgtgaggaacgcgccccg
cgtgaagaacgtactccgcgccagccacgcgaagaccgccgtagcaaccgcggcgaagaa
cgcgttcgcgagctgcgcgaaccgctggacgtcaccccgccagccgaacgcgaagagcgc
cagccgcgtgaagaacgtgtagcccgcgaagagcgtgctccacgcgaagaacgcgcacct
cgcgaagaacgtgctccacgtgaagaacgcgcaccgcgtgaagaacgtgctccacgtgaa
gaacgcgcactgcgtgaagaacgtgctccacgtgaagagcgcgcacctcgggaagaacgc
gctccacgcgaagaacgcgccccgcgcccaccacgcgaagagcgccaaccacgcgctgcc
gaagaagcaaccgagcaggctgccgaactggccgaagagcaactgccaggcgaagagctg
ctgcaagacgagcaggaaggcaccgatggcgagcgcccacgccgccgctcccgtggccag
cgtcgtcgcagcaaccgtcgtgagcgtcagcgcaatgccaatggcgagctgatcgacggc
agtgaagaagaaggcagcgaagagcagccacaacagcaccaggccaccgagctgggtgcc
gaactggctgccggccttgccgtgacagctgctgtcgccagcagcaacatcagctctgat
gcagaagcccaggccaaccagcaggccgagcgtgccaccgccgaagtcgctgccgttgca
gaaaccgacaacagcgaagccgcccagccggtcgagcaggccgaagcggtcaccaaagct
gaagaagcgtccgtggccccagcggtcgagcagccggtcaccgagccagtggccgcagcc
gaggcaactgccgagcctgtggtcgaaatggccccgcagcctgtcgctgaagatgcacct
gctgctgagccggccgttgttgcagaaaccgtggtcactgaaaccccagcagaagcccca
gcggtagaagccggtgaaatcgaacaggccccggccgtggtcgaagtcgctccggttgcc
gcacagcctgccccggttgtcgaagcccagccagaagtggtggccgagcctgcacctgca
gtggtcgaacctgccactgtcatgctggccaacggccgcgcaccgaacgacccacgtgaa
gtgcgtcgccgcaagcgtgaggccgaggctgctgccaaagcggcacaggaagctgctgca
gcctcccaggaaccagccttggaaaccgccgatgagcacaaacctcatcacggctga
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