Pseudomonas piscis: QL104_09385
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Entry
QL104_09385 CDS
T09652
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QL104_09385 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppii03019
]
QL104_09385 (rne)
03009 Ribosome biogenesis [BR:
ppii03009
]
QL104_09385 (rne)
Enzymes [BR:
ppii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QL104_09385 (rne)
Messenger RNA biogenesis [BR:
ppii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QL104_09385 (rne)
Ribosome biogenesis [BR:
ppii03009
]
Prokaryotic type
rRNA processing factors
QL104_09385 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WMN19601
UniProt:
A0ABY9NMJ8
LinkDB
All DBs
Position
complement(1970719..1973940)
Genome browser
AA seq
1073 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASQDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPDANNNQSSYEIAAAAAEAEEPQPAAGTRTLVRQEAAVKTAPARANAPVPT
EAAAPAPAPAPTPVAEPSLFKGLVKSLVSLFASKEEPAAPVVAEKPTPERPARNEERRNG
RQQSRSRNGRRDEDRKPREERAPREERAPREERQPRELREARDEGQATAREERQPRAPRE
ERQPRAPREDRKPRGEREERVRELREPLDAAPAVAATAAVAEERPARQPREERQPRAPRE
ERQPRAEQAQAAAVSEEEALPNEEQLLEEGQDNAEGERPRRRSRGQRRRSNRRERQRDAN
GNLIEGSEENTEEPSSDDLAAGLAVTAAVASTVISANAEAEAHQQAERATAAVAEPAPEA
PVVEATTAVEAPAAPAVEVAPAAEVAPAAEQPVEVAAEPAVVVDTQPVVAEQPVVEPVAP
APAFEEPAAEPAPVAAPVAEPVIEQPVVAEQPAPVVEPAPVVAPVAVEAPAPVAEAAPAS
ALTSNGRAPNDPREVRRRKREAERLQKEAELAAAAAPAEAVVAVEATPVVEAPAIVEAVP
APVEAPAAAPAPVAEPEAQQPAPVVEEAPRAVEHSPEHVAHAEEKEHETKPLV
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgccctggtagac
ggccagcgcctctacgacctggacatcgagtccggtgcacgcgagcagaaaaaggccaac
atctataaaggccgcatcactcgtatcgaacctagcctcgaggctgcctttgtcgatttc
ggctctgagcgccacggcttcctgcctctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagaacgtggcaacaagggcgcagccctgaccactttcatcagcctg
gccggtcgctacctggtcctgatgccgaacaaccctcgcgccggtggcatctcgcgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagcactgaacggcctggtggcacctgcc
gacatgggcctgatcgtccgcactgccggcctgggccgcagcagcgaagaaatgcaatgg
gacctggactacctgctgcaactctggaccgctatcaaggaagcgtcccaggaccgttcc
gcgccattcctgatctaccaggaaagcaacgtcatcatccgcgcgatccgcgactacctg
cgccaggatatcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccttccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatcgac
atcaactcggctcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggcggaagaaatcgctcgccagctgcgcctgcgcgatatcggcggcctgatc
gtcatcgacttcattgacatgacccctgccaagaaccagcgtgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgcccgcgtgcagatcggccgcatttcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgagagcagcgggatcgtc
tgcccacgctgcagcggcaccggcatcatccgtgacgtcgagtcgctgtccctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtccgtgcccaggta
ccgatcccggtcgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgtacccgcgcccgtatcatcatcctgccgaacgatcacctggagacgccgcacttc
gaagtccagcgcctgcgtgatgacaacccggacgccaacaacaaccagtccagctacgaa
atcgccgctgccgctgccgaggccgaagagccacaaccggccgccggcactcgcaccctg
gttcgccaggaagccgcggtgaagacagctccagcgcgtgccaacgctccggttcctacc
gaagccgccgccccagcgcctgctccggcaccgactccggtggccgagccaagcctgttc
aagggcctggtcaagtccctggtcagcctgttcgccagcaaggaagagcctgccgcacca
gtggtggccgagaaaccgacccccgagcgtcctgcccgtaacgaagaacgtcgcaacggt
cgccaacagagccgtagccgcaacggtcgtcgcgacgaagatcgcaagccgcgcgaagaa
cgtgctccgcgtgaggaacgcgcaccacgggaagagcgtcagccgcgtgaactgcgcgaa
gctcgtgatgaaggccaggccactgctcgcgaagagcgccagccgcgtgcaccgcgagaa
gaacgccagccacgcgccccgcgcgaagatcgcaagcctcgcggcgagcgtgaagagcgc
gtacgcgaactgcgcgaacccctggatgccgctccagcggtagccgctactgcagccgtg
gccgaagagcgtccggctcgccagccacgcgaagagcgccagccacgtgcgccacgtgaa
gagcgccaaccacgtgccgaacaggcccaggccgcagccgtcagcgaagaagaagcgctg
cctaacgaagagcaactgctggaagaaggccaggacaacgccgaaggcgagcgtccacgt
cgtcgctcccgcggccagcgtcgtcgcagcaaccgtcgcgagcgtcagcgtgacgccaac
ggcaacctgatcgaaggctcggaagaaaataccgaagagccaagcagcgacgacctggcc
gccggcctggcagtcaccgctgccgttgccagcaccgtgatcagcgccaatgccgaagcc
gaggctcatcagcaagccgaacgcgctaccgccgccgttgccgaaccggcccctgaagca
ccggtggtcgaggccaccactgcggtagaggctccagccgcaccagccgtggaagtggct
ccagcagccgaagtcgcaccagccgctgaacagccggtcgaggtcgctgccgaacccgcc
gtggtcgtcgacacccagccggtggttgccgagcagcctgtcgtagaacctgtagcccca
gctccagcgttcgaagaaccagccgccgagccagccccggtagccgctccagtagctgaa
ccggtgatcgagcagccagtggttgccgagcagccagccccggtagtggagcctgctccg
gttgtcgctccagtagcggtcgaggctccagctccggtagccgaagcggctccggccagc
gccctgaccagcaacggccgcgcacccaacgacccgcgcgaagtgcgtcgccgcaagcgt
gaagccgagcgcctgcagaaggaagccgaactggctgccgctgctgctccggccgaagcc
gtggtcgctgtcgaagctacaccggtagttgaagcccctgcgatcgtcgaggcagttcct
gcacctgtcgaagctcctgccgcagctcctgcgccagttgccgagcctgaggcgcagcaa
cctgccccagtggtcgaagaagcgccacgcgctgtcgagcacagccctgagcacgtagcc
cacgccgaagagaaagagcacgagaccaaacctctcgtctga
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