Photobacterium piscicola: ACJZU6_00650
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Entry
ACJZU6_00650 CDS
T11087
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACJZU6_00650 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppil03021
]
ACJZU6_00650 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppil03400
]
ACJZU6_00650 (rpoB)
Enzymes [BR:
ppil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACJZU6_00650 (rpoB)
Transcription machinery [BR:
ppil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACJZU6_00650 (rpoB)
DNA repair and recombination proteins [BR:
ppil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACJZU6_00650 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
FapA
SPG4
Cas_Cas2CT1978
DUF6155
Motif
Other DBs
NCBI-ProteinID:
XLM58241
LinkDB
All DBs
Position
1:complement(133864..137889)
Genome browser
AA seq
1341 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDAPYLLSIQLDSFQKFIEQDPEGHYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALNYTTEQILDMFFDKINFEVRGKSLVME
LVPDRLRGETASFDIEANGTVYVEQGRRITARHIRQLAKDGIDSIEVPVEYIVGKIAARD
YINEETGELIVTANQELSLEALALLSQAGHKSIEVLFTNDLDHGPYMSETLRVDNSTDRL
SALVEIYRMMRPGEPPTREAADQLFESLFFSEDRYDLSAVGRMKFNSSLLREEITGPGIL
SNDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVFARCNPYGFLETPYRKVVDGKVS
DQIEYLSAIEEGLYVIAQANAALNEDGSFADELITARQKGDSGLHPRDHVQYMDVATNQV
VSVAASLIPFLEHDDANRALMGANMQRQAVPTIRADKPLVGTGIERQIGVDSGVTAVAKR
GGQVQSVDASRIVIKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPGSVTGTIIDVQVFTRDGVEKDKRALEIEEMQLKEAKKDI
TEEFQILEGGLLARVRTLLLSAGYGEDKISSMNRDTLFAQTLDDETLQNQLEQLAEQYDE
LKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVRRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQTVDIVLNPLGVPSRMNIGQILETHLGLAAKGIGDKLNDMLKEQQELHK
FRNFLQRVYNLGDTRQKVDIAELSDDEVRTLVQNLRKGLPIATPVFDGAPESSIKELLQL
GDLPTSGQLKLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPE
SFNVLLKEIRSLGINIELEDE
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgtatccgtaaggattttggtaagcgtccacaa
gtgttggatgcaccatacttgctatcgatccagcttgattctttccaaaaatttatcgag
caggatccagaagggcattacggtctagaagctgcctttcgctctgtttttccaatccag
agctataatggcaattccgagctgcaatacgttagctatcgtctcggtgagccggtcttc
gatgtcaaagaatgtcaaattcgtggcgtaacttattctgctccactacgcgtgaagcta
cgtctggtcatgtatgatcgagatgcgccggctggcaccgtaaaagacattaaagaacaa
gaagtttacatgggcgaaattccgctcatgacagataacggtacattcgttattaacggt
accgagagggttatcgtatctcagctgcaccgtagtcctggtgtattctttgacagcgat
aagggtaaaacccactcctcaggtaaagtgttatataacgctcgtgttatcccttaccgt
ggttcatggttggatttcgagttcgatcctaaggataatctattcgtacgtatcgaccgt
cgtcgtaaattacctgcgtctattattcttcgcgcacttaactacacaactgaacagatt
cttgacatgttcttcgataagattaatttcgaagtacgcggcaagtctctagttatggag
ttagtacctgatcgtctacgtggtgaaactgcaagctttgatatcgaagcaaacggtact
gtttacgtagagcaaggtcgtcgtatcactgctcgtcatattcgtcaattggcgaaagat
ggcattgatagcatcgaagtacctgttgaatatatcgttggtaaaatcgcagcacgtgat
tacatcaacgaagaaactggcgaactgattgttacggctaaccaagaattaagcttggaa
gcattagcacttctatctcaggctggtcataagtctattgaagttctatttacgaacgat
ttagaccatggtccgtacatgtcagagacactacgtgttgataacagtactgaccgtcta
agtgcattggtagaaatctaccgtatgatgcgccctggcgagccaccaacacgtgaagca
gctgatcaattatttgaaagcttgttcttctcagaagatcgttacgatctttctgctgtt
ggtcgtatgaagttcaacagttctcttcttcgtgaagaaataactggtcctggtatcctg
agcaacgacgacatcattgaagtgatgaagaagttgatcgatatccgtaacggtaaaggt
gaggttgatgatatcgaccaccttggtaaccgtcgtattcgctctgtgggcgaaatggct
gaaaaccaattccgtgtaggtctagttcgtgttgagcgtgctgttaaagagcgtctaagt
ttaggcgatcttgatgcaatcatgcctcaagacttaatcaacgcgaagcctatttctgcg
gcagtgaaagagttctttggctcttctcagttgtcacagtttatggaccagaacaacccg
ttgtcagaagttactcacaaacgtcgtatctcggcgcttggtccaggtggtctgactcgt
gaacgtgctggctttgaggttcgagacgtacacgcgactcactacggtcgtctatgtcct
atcgaaactcctgaaggtccaaacatcggtctaatcaactcgctatctgtatttgcgcgt
tgtaacccttacggtttcttggaaacaccttaccgtaaagttgtagacggaaaagtttcg
gatcaaatcgaatacttatcagcaattgaagaaggcctatacgttattgcacaggcaaac
gccgcgcttaacgaagatggttcttttgctgacgaattgatcactgctcgtcagaaaggc
gattcaggtctgcacccacgtgaccatgttcaatacatggacgttgcaaccaaccaggtt
gtatctgtggcggcatccctaatcccgttcctagaacacgatgatgctaaccgtgccctt
atgggtgcgaacatgcaacgtcaggctgtacctactatccgtgctgataagccgttagtt
ggtactggtatcgagcgtcaaatcggtgttgattcaggtgtaactgctgttgctaaacgt
ggcggccaagttcagtctgtagatgcttctcgtatcgttatcaaagttaacgaagacgaa
ttgattcctggtgaagcaggtatcgatatctacaacttgactaagtacacccgttctaac
cagaacacatgtattaaccagcgtccaactgtactacctggcgagccagtagcacgtggt
gatgttcttgctgatggtccttcaacagaccttggtgagcttgcgcttggtcaaaacatg
cgtatcgcgttcatgccttggaacggttacaacttcgaagactccatcttagtttctgag
cgtgtagttcaggaagatcgtttcactactatccacattcaagagctttcttgtgtggca
cgtgatacgaagttgggttctgaagaaatcactgcagacatccctaacgtgggtgaagca
gcgctttctaagttggacgaatcaggtatcgtttacatcggtgcagaagtgaagggtggt
gacatcctagttggtaaagtaacccctaaaggtgaaacacaactgacgcctgaagagaag
cttctacgagctatctttggtgaaaaagcttctgacgttaaagactcatctctacgtgtt
cctggtagtgttactggtacgatcattgacgtacaagtatttactcgtgatggcgttgag
aaagacaagcgtgctcttgaaattgaagagatgcagctgaaagaagcgaagaaagatatc
acagaagaattccagatccttgagggtggtcttcttgctcgtgttcgtacgcttctacta
tctgcaggttacggcgaagataagatttcttcaatgaaccgcgatacgttgtttgcacaa
acgcttgacgacgaaactttacaaaaccaattggaacagcttgcagaacagtatgatgaa
ctgaaagctgagttcgataagaagtttgaaactaaacgtcgtaaaatcactcagggtgat
gacctagcacctggcgtacttaagattgttaaagtatacctagctgttcgtcgtcgcatt
caacctggtgataagatggcaggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccttacgatgaaaaaggtcagactgttgatatcgtactaaaccca
ttgggtgtaccgtcacgtatgaacatcggtcagatcctcgagactcacttaggtcttgcg
gcgaaaggtatcggtgacaaacttaacgacatgctgaaagaacagcaggagttacataag
ttccgtaacttcctacaacgtgtttacaatcttggtgatactcgccagaaggttgacatt
gctgaactatcagacgacgaagtacgtacacttgtacaaaaccttcgtaaaggtctacct
attgcaactcctgtatttgatggcgcacctgaatcatcaattaaagaattgctacagtta
ggtgatctaccaacgtctggtcagctgaagttgtttgatggccgtactggtgatgcattt
gagcgtcctgtaactgttggttacatgtacatgcttaaactgaaccacttggttgatgac
aagatgcacgcccgttctaccggttcttacagccttgttactcagcagccgctgggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcgcttgaagcatat
ggcgcagcttacacccttcaagaaatgctaaccgttaagtcagatgacgttaacggccgt
acgaagatgtataaaaacatcgttgacggtgatcatcgtatggaacctggtatgccggaa
tcattcaacgtattgttgaaagaaatccgctcgttgggtatcaacatcgagctggaagac
gaataa
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