Pandoraea pnomenusa 3kgm: U875_06815
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Entry
U875_06815 CDS
T02936
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk00260
Glycine, serine and threonine metabolism
ppk00460
Cyanoamino acid metabolism
ppk00630
Glyoxylate and dicarboxylate metabolism
ppk00670
One carbon pool by folate
ppk00680
Methane metabolism
ppk01100
Metabolic pathways
ppk01110
Biosynthesis of secondary metabolites
ppk01120
Microbial metabolism in diverse environments
ppk01200
Carbon metabolism
ppk01230
Biosynthesis of amino acids
ppk01240
Biosynthesis of cofactors
ppk04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
U875_06815 (glyA)
09102 Energy metabolism
00680 Methane metabolism
U875_06815 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
U875_06815 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
U875_06815 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
U875_06815 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
U875_06815 (glyA)
Enzymes [BR:
ppk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
U875_06815 (glyA)
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Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
AHB05139
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Position
1459209..1460456
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AA seq
415 aa
AA seq
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MFDKSKSTVAAVDPDVWAAIQKENQRQEDHIELIASENYTSPAVMEAQGSQLTNKYAEGY
PGKRYYGGCEYVDVVEQLAIDRVKALFGAEAANVQPNSGSQANQGVYFAMLKPGDTIMGM
SLAHGGHLTHGSPVNMSGKWFNVVSYGLNENEDIDYDAAEKLAQQHKPKMIVAGASAFAL
KIDFERMARIAKSVGAYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVI
LMKAEFEKAINSAIFPGIQGGPLMHVIAGKAVAFKEAATPEFKAYQEQVVKNARVLAETL
VKRGLRIVSGKTESHVMLVDLRAKNITGKAAEAALGEAHITVNKNAIPNDPEKPFVTSGV
RLGSPAMTTRGFKEAEAELVGNLIADVLDNPENAETLATVRAKVAELTKRFPVYG
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaaatcgaaatccaccgttgccgccgtcgatcccgacgtgtgggccgcgatt
cagaaggaaaaccagcgtcaggaagaccacatcgagctgatcgcgtcggaaaactacacc
agcccggccgtgatggaagcgcagggctcgcaactgaccaacaagtatgcggaaggttat
ccgggcaagcgctattacggtggttgcgagtatgtcgacgtggtcgaacaactggcgatc
gatcgggtgaaggcgctgttcggtgccgaggccgcgaacgtgcagccgaactccggctcg
caggccaaccagggcgtgtacttcgccatgctcaagccgggcgacacgatcatgggcatg
agcctcgcccacggcggtcacctcacgcacggctcgccggtcaacatgtcgggcaagtgg
ttcaacgtggtgagctacggcctgaacgagaacgaagacatcgattacgacgctgccgag
aaactcgcgcagcaacacaagccgaagatgatcgtggcgggcgcatcggccttcgccctg
aagatcgacttcgagcgcatggcgcgcatcgccaagtcggtcggcgcctatttcatggtc
gacatggcgcactatgccggcctgatcgccgcgggcgtgtacccgaaccccgtgccgcac
gccgatttcgtgacgaccaccacgcacaagagcctgcgcggcccacgcggcggtgtgatc
ctgatgaaggccgagttcgagaaggccatcaattcggcgatcttcccgggaatccagggt
ggcccgctcatgcacgtgatcgccggcaaggccgtcgcgttcaaggaagccgccacgccg
gaattcaaggcgtatcaggaacaagtcgtgaagaacgcacgcgtgctggccgagacgctg
gtcaagcgtggcctgcgcatcgtgtcgggcaagaccgaatcgcacgtgatgctggtcgac
ctgcgcgccaagaacatcaccggcaaggctgccgaagccgcgctgggtgaagcgcacatc
accgtcaacaagaacgccattccgaacgatccggaaaagccgttcgtgacgagcggcgtg
cgtctgggctcgccggccatgaccacgcgtggcttcaaggaagctgaagccgagctggtc
ggcaacctgatcgccgacgtgctggacaacccggaaaacgccgaaacgctggccacggtc
cgcgccaaggtcgccgagttgaccaagcgcttcccggtctacggctaa
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