Planococcus plakortidis: BBI15_12245
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Entry
BBI15_12245 CDS
T04812
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppla
Planococcus plakortidis
Pathway
ppla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBI15_12245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppla03021
]
BBI15_12245
03400 DNA repair and recombination proteins [BR:
ppla03400
]
BBI15_12245
Enzymes [BR:
ppla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBI15_12245
Transcription machinery [BR:
ppla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBI15_12245
DNA repair and recombination proteins [BR:
ppla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBI15_12245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ANU20905
UniProt:
A0A1C7EB40
LinkDB
All DBs
Position
115309..118863
Genome browser
AA seq
1184 aa
AA seq
DB search
MTGQLVQYGQHRQRRSFSRISEVLDLPNLIEIQSSSYEWFLEEGLREMFRDISPIEDFTG
NLSLEFVDYSLADPKYPVDESKERDVTYAAPLRVKVRLHNKETDEVKEQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFHDKTDKNGKRGFGATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLLGDNEYLQNTLEKDNTENTEKALLEIYERL
RPGEPPTVESAKSLLYSRFFDPKRYDLANVGRYKMNKKLHIKNRLFNQTIAETLVDPETG
EILVEAGTVIDRRVLDRLIPNLENGVGFHTVSQAGGVLEDDVTLQSIKIYAPNDDEQKEI
TVISNAYIEDKIKNVTPADIISSISYFFNLLHGVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTQSIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINTLSTFAKVNKFG
FIETPYRRVDPETNKVTDQIDYLTADEEDNYVVAQANSRLNEDGSFVEEEVVARFRGENT
VYSRSSIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFVGTG
MEHLAARDSGAAVIAKYGGIVEYVEAKEIRVRRIENVEGNEVKGDVDTYRLQKFIRSNQG
TSYNQRPIVKVGDRVEKRDILADGPSMERGEMALGRNVLVGFMTWDGFNYEDAIIMSERL
VKDDVYTSIHIEEYESDSRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKIFNREDGDEL
PPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPIDIMLNPLG
VPSRMNIGQVLELHLGMASRSLGLHMASSVFDGANEEDVWETMEEAGMPRDGKTILYDGR
SGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPSVPESFKVLIKELQSLGMD
VKMLTIDDEEIELRDLDEEDDLQPADSLNILPIADEESPVGTIE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtacggtcagcatcgtcaacgcagaagtttttcgagaatc
agtgaagttctagatctcccgaatctgattgagatccaatcgtcttcttacgaatggttc
ttagaagaagggcttcgtgaaatgttccgcgacatttcaccaatcgaagatttcacaggg
aacctttccttggaattcgtcgactacagcctagcggatcctaagtacccggttgatgaa
tcgaaagaacgggacgtcacttacgcagcgccactgcgtgtaaaagtgcgccttcacaac
aaagaaacggatgaagtgaaagaacaggacgtcttcatgggtgacttcccattgatgaca
gaaactggaacttttgtcatcaatggcgctgaacgcgtcatcgtttcgcaattagtacgc
tcaccaagcgtctatttccacgacaagacagataaaaacggcaaacgtggttttggtgcc
actgtcattccaaaccgtggtgcatggcttgaatatgaaaccgatgcaaaagatgtcgta
tacgtacgcatcgaccgcacccgcaaattgcctgtgacggttcttttgcgtgcgctaggc
tttggttccgaccaggaaatcattgacttgctcggcgataacgagtatttgcagaacaca
ttggaaaaagacaatactgaaaacacggagaaagcgcttcttgagatttatgagcgccta
cgccctggagagccaccgacagtagaaagcgcaaagagcttgctctactcgcgtttcttc
gacccaaaacgctacgatttggcgaatgtcggccgctacaagatgaacaaaaagcttcat
attaaaaaccgcttgttcaatcagacgattgcagaaacgcttgtcgatcctgaaacgggc
gaaattttagtagaagctggaactgttattgaccgccgtgtccttgaccgcctgatccct
aatctggaaaatggagtcggtttccataccgtttcccaagctggaggcgtgcttgaagac
gacgtgacactccaatccattaaaatctatgcgccgaatgacgatgaacaaaaagaaatt
accgtcatcagcaatgcatatatcgaagacaagatcaaaaacgtaacgcctgcagatatc
atctcgtctatcagctatttcttcaacttgctgcatggcgtcggcaatacagatgatatc
gaccaccttggtaaccgccgtttgcgttcagttggcgaacttctgcagaatcaattccgt
atcggcttgtcccgtatggaacgtgttgtgcgcgagcgtatgtcaattaatgacacgcaa
tcgatcgtacctcagcaattgatcaatatccgcccggttattgcatcgattaaagagttc
ttcggcagctcccagttgtcgcagttcatggaccaaacgaacccgcttgctgaattgacg
cataaacgccgtctatctgcgcttgggcccggtggtttgacgcgtgagcgcgccggtttt
gaagtgcgtgacgttcactactcccactatggccgcatgtgcccgatcgaaacgcctgag
ggcccgaacatcggcttgatcaacacgctttcaacatttgcgaaagtgaataaattcgga
ttcatcgaaacaccttatcgccgcgtcgatccggagacgaataaagtcaccgaccagatc
gattatctaacggctgatgaagaagacaactatgtcgtcgcacaggcgaactcacgcttg
aatgaagacggatcgtttgtcgaagaagaagtcgttgcacgcttccgcggtgagaacacc
gtctacagccgctcgagcatcgattatatggacgtttctccaaaacaagtcgtgtcggtt
gcgactgcttgtatcccgttccttgaaaacgatgactccaaccgtgcgttgatgggagcg
aacatgcagcgtcaagctgtgcctctattgaatccggaagctccatttgtcggaaccggc
atggaacatttagctgcacgtgattccggtgctgccgtgatcgcgaagtatggcggaatt
gtcgaatacgtggaggcaaaagagatccgcgttcgccgcatcgaaaacgtagaaggcaat
gaagtcaaaggcgatgtggatacgtaccgcctgcaaaaattcatccgttcgaaccaaggt
accagctacaaccagcgcccgattgtcaaagtcggcgaccgcgtagaaaaacgcgatatc
ctggctgatggcccttcaatggaacgcggtgaaatggcgcttggccgtaacgtgcttgtc
ggattcatgacttgggacggctttaactatgaggatgcgatcatcatgagtgagcgcctc
gtcaaagatgacgtctacacgtcgatccatatcgaagaatacgaatcagattcccgtgat
acaaagctcgggcctgaagaaatcacgcgtgatatcccgaacgtcggcgaagatgctcta
cgcaacttggacgaccgcggcattatccgtgtcggtgctgaagtgaaagatggcgacatc
ctggtcggtaaagtaacgcctaaaggggttacagaactgacagcagaagaacgcctgctt
catgcaatcttcggtgaaaaagcgcgtgaagttcgcgatacttccttgcgtgtgcctcac
ggtgcaggcgggatcgtgcttgatgtgaaaatcttcaaccgcgaagatggcgatgaattg
ccgccgggcgtgaatcaattggtccgtgcttatattgtccaaaaacggaaaatctccgtc
ggggacaagatggccggacgccacgggaacaaaggtgttatctcccgcatcttgccggaa
gaagatatgccgttcatgccggatggcacgccgatcgatatcatgttgaacccgcttggt
gttccttcccgtatgaacatcgggcaggtgcttgaacttcacttgggcatggcttcccgt
tctcttggccttcacatggcttcatcggtattcgatggcgcgaatgaagaagatgtctgg
gaaacgatggaagaagccggaatgccgcgcgacggaaaaaccatcctttatgatggccgc
tccggtgagccattcgacaaccgcgtatctgtcgggatcatgtacatgatcaaactggca
cacatggttgacgataaactccatgcacgttcaaccgggccatactcgctcgttacacag
cagccacttggcggtaaagcgcaatttggcggtcagcgtttcggggagatggaagtttgg
gcacttgaagcatacggtgctgcgcataccctccaggaaatcttgacggtgaaatcagat
gacgtggtcggccgtgtgaaaacgtatgaagctattgtcaaaggcgaaagtgttccagaa
ccaagcgttccggaatcattcaaagtattgatcaaagagcttcagagtttgggtatggac
gtcaaaatgctcacaatcgacgatgaagaaatcgaattgcgcgatttggatgaagaagac
gatcttcaacctgcagattcactgaacatcttgccaatcgctgacgaagaatcaccagta
ggcacgattgaataa
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