Pleuronectes platessa (European plaice): 128443950
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Entry
128443950 CDS
T09923
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128443950 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128443950 (cnot1)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128443950 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128443950 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
128443950
NCBI-ProteinID:
XP_053282166
LinkDB
All DBs
Position
7:4666666..4686979
Genome browser
AA seq
2397 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLIKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAALFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLSEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPSLNFKEVTYE
LDHAGFSIRDSKGLQIVVYGIQRGLGIEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHNVATDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKLC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSLSMDPLSA
MGSLNLGSTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQL
PGMDSGPLSTGISSGIGASLGMPTVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLA
LAQVQSQSQQPGGPKAPQPGPPSTLVTPTTTTTTAAKTTTITRPTPGTFKKDVPPSINTT
NIDTLLVATDQNERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYLKGQQELLYVVPFVAKVLESSLRSMVFR
PQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKCLE
EQLSAPKKEVKPPEELLPVSTTVFMPTGDFVPFAAPPSTPAATTPACTTTGPPTPQFSYH
DINVYALAGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTC
EQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAP
TPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRY
CDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMK
QQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQSLRSLLEAVALARNSRDGIAAL
GLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRD
EYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHV
TEADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQA
SEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHGQGILKTDDLITRFF
RLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTK
INLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAF
CNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFL
RNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRN
MRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSN
LQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLD
TEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHP
WGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7194 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcagatcagctatctggtggacaattta
ataaagaaaaactaccgagccagccagcaagaaatacaacatattgtgaatcgtcacggt
cccgaggcagacaggcatctactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcgaagccaaactttatctcaactctgtgttacgccattgacaatcccctacac
taccagaagagtttgaagccatcggcccatttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggttatatttggacttgctctgctcaattccagtaacacagac
cttcgcggctttgctgcactgttcgtcaagcagaaacttccagatctcctgcggtcatac
gtggacgctgatctcggaggaaaccaggaaggcggctttcaagacattgccatagaggtc
ttgcacctactgctctcccatcttctgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctcaagacactttgccgagattttccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatccta
ccagactcgggggagttggctaagaccatgatggagagttctctctcagagttcatgcaa
gaagttggctatggcttctgtgcaagtgtggatgagtgcagaaatataatcctccagtat
ggggtgagagaggtgacggccagccaggtagccagggtcctaggcatgatggcacgcacc
cactctggtctaactgatggcatccccctacagtccatctctgctccaggtagtggtatc
tggagtgatggtaaggataagaacgacggctcgcaggcccacacatggaatgtcgaggtt
ctcatcgacgttgtcaaagaagttaatcccagccttaacttcaaagaggtgacgtacgaa
ctggaccacgcgggtttttccatccgtgacagtaaaggcctgcaaattgtggtgtatggc
attcagaggggattgggcattgaggtgttccctgttgatctcatctatcggccatggaaa
cacgcagagggacagctgtcgttcattcaacactccttgatgagtccagaagtgttttgt
tttgccgactacccctgtcacaatgtggccactgacatcctgaaggcgccaccagaggat
gacaaccgggagattgccacatggaaaagtctggacctggttgagagcctgctcaggctg
tcggaggtgggccagtacgagcaggtgaagcagctgttcagcttcccaatcaaactctgc
cccgacatgttggtgttggcattacttcagatctccacctcctggcacacactgcgccat
gagctcatctcgaccctaatgcccatctttctgggcaaccaccccaactctgccattatc
ctgcactacgcttggcatggacagggacagtctccatccatccgtcagttaataatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaagcaaagctgtctcgcatc
ctggacgtggcccaagacttgaagtctctatcgatgctgctgaatggaactccatttgcc
tttgttattgacctcgctgcactcgcctcgcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccgtttatccaggcgtgtgtgacattccta
aagaggcgctgcccatccattatggggggtctggcccctgataaggaccagcccaaaagt
gcccagcttccgcctgagaccttagccacaatgctggcctgcctgcagtcctgtgctggg
agcgtgtcccaggagttgtcggagactatcctcacgatggtcgccaactgcagcaatgtg
atgaataaagctcggcagccaccaccaggggtgatgcccaagggacgtgcacccagcacc
agcagcctggatgccatctcacctgtacaggtatcattaagtatggaccctctgtctgcc
atgggttccttgaacttagggagcacagccacctcacacactcagagcatgcaaggtttc
cccacctcactgagttcagcttttagtaatccccagtccccagctaaggccttcccccca
ctgtccaaccccaaccccagcacaccatttgggggaattggcagtctgtcctcacagctc
cctggaatggactctggtcccttgagcacaggcatcagctctggcattggcgctagcctg
gggatgccaactgtaagcactgacccgtttggcaccaggaagatgagcacaccaggcctg
aatccacctacctttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcac
tttagcaaagagatagacgatgaggcaaacagttacttccagcgcatctacaaccaccca
cctcacccgaccatgtccgtggatgaagtactcgagatgctgcagaggttcaaggattca
aacatcaagcgggagcgagaggtcttcaactgcatgcttcggaacttgtttgaggaatac
cggttcttcccccagtacccagacaaggagctgcacatcactgcctgcctttttggtgga
attattgagaagggtcttgtcacctacatggcccttggcttagccctccgatatgtcctt
gaagccttaagaaaaccctatggatccaaaatgtattactttggaatagctgccctagat
aggttcaaaaacagactaaaggactatcctcagtattgtcaacacttggcttcaattgcc
cacttcttgcagtttccccaccatttacaagagtgtgtgcagtatatcgagtatggccaa
cagtcacgggaccctccggtgaagatgcaaggctccatcaccacacctggtagtctggcc
ctggcacaagttcagtcccaatcgcagcagcctggcggccctaaagccccacaaccaggt
ccacccagcaccctcgtcacccccaccacgactacaaccacagcagcaaagaccaccacc
ataacaagaccaacgcctggcaccttcaagaaggatgtacctccctccataaacactacc
aacattgacacactgctggtggcaactgaccaaaatgaaaggattgtagagcctccagag
aatgtccaggagaagatcgcttttatcttcaacaacctgtcccagtccaacatgacacag
aaggtggaggagttgaaagagactgtgaaggatgagtttatgccctgggtgtctcaatac
ctcgtgatgaagcgtgtcagcattgagcccaacttccacagtctgtactccaactttctg
gacactctcaagaacccagagtttgtcaagatggtcctcaatgagacttacaggaacatc
aaggtcctcttgacctcggacaaggcagctgccaatttctctgatcgctccctgctgaag
aatctgggccactggttggggatgataacactggctaagaacaagcccatcctctataca
gatctggaagtcaagtctctgctactagaagcctacttgaaaggccagcaggaattactc
tatgtggttccctttgtggccaaagttttggaatctagtctgcgtagcatggttttcagg
ccccagaatccctggactatggccatcatgaatgtccttgccgagcttcatcaggaacat
gacctcaagcttaacttaaagtttgaaattgaagttctttgtaagaacttgtctctggac
ataaacgacctgaagcctggaaccctcctgaaggacaaagacaagctgaagtgtctggag
gagcaactttctgcaccaaagaaggaggtcaaacccccggaggagctgctcccagtctct
accacagtctttatgccaacaggggactttgtcccattcgcagctcctccctcaacccca
gcggccacaacccccgcctgcacaaccactgggccccccaccccacagttcagttaccat
gacatcaatgtgtacgccttggctggcctggctccacacatcaatataaatgtcaatatc
ccactgctacaggcccaccctcagttgaagcagtgtgtacggcaatcagtagagcgagcc
gtccaggagctagtgcatcctgtggtggatcgctctattaaaattgctatgacaacctgt
gagcagatcatcaggaaggactttgccctggactcagaggagtcccgcatgcgcgtcgct
gcccatcatatgatgagaaacctgaccgctggcatggccatgatcacctgccgcgagccg
ctgctcatgagcatcgccaccaacctgaagaacagttttgctgctgctctcagggcacca
accccacaacaaagggaaatgatggaagaggctgctgctcggatcgctcaagacaactgt
gaattagcttgttgtttcattcagaaaacggctgtggagaaggctggtcctgaaatggac
aagagactggccacggagtttgagctgaggaagcacgcacgccaggagggacggcgttat
tgtgatcctgttgtcttgacttaccaagcagaacgtatgcccgagcagataagactcaag
gtgggaggagtggacccgaagcaactggctgtgtatgaggagtttgccagaaatgttccc
ggtttcctccccagtaatgatctctctcaacccactggcttcctggctcagcccatgaag
caacaggcatgggccacagacgatgtggctcagatctacgataagtgcatggcagactta
gagcaacatcttcatgctatccctcccgccctcgccatgaaccccttgacccagtccctg
cgcagcctgctggaggcagtggctttggcacggaactccagggacggcatcgccgcactt
ggcctcctgcagaaggctgttgaaggtcttcttgatgccactagtggggctgatgccgac
ttgctgctccgctacagagagtgccacctgctggtgctcaaagccctgcaggacggacgt
gcctacggaccacagtggtgcaataagcagatcaccaggtgtctgatagaatgccgtgat
gagtacaaatacaacgtagaagctgttgagcttctgatcaggaaccatcttgtgaatatg
cagcagtatgacttacaccttgcacagtcaatggaaaatggattgcactacatggcagta
gcgttcgccatgcagttagtgaagctgctgctcgtggatgaacgcagcgtcagccatgtc
acagaggccgacctcttccacaccattgagacgctgatgaggacttgtgcacactccaga
gccaacgcacctgagggtcttccccagctcatggatgttgtacgctccaactacgaagcc
atgattgaccgggcccacggtggacccaactttatgatgcactctgggatttcacaggct
tcagaatacgacgatcccccaggcctgagggagaaggcggagtacctgttgagggaatgg
gtgaacctgtatcactcggctgctgctggcagggacagtaccaaagcattctctgccttt
gttggccagatgcacggacagggaatcttaaagaccgatgacctgatcacaaggttcttc
cggctgtgcacagaaatgtgtgtggagatcagctatcgggcccaagctgagcagcagcac
aacccagcagccagcgcagccatcatccgagccaagtgttaccacaacctggatgccttt
gttaggctgatagctctgctggtcaaacactctggagaggccaccaacacagtgacaaag
atcaacctcctcaacaaggtgctgggtatcgttgttggggtgttgatccaggaccacgat
gtccgtcagacagaattccaacagctgccataccaccgcattttcatcatgctgctgttg
gagctcaatgctcctgaacacgtccttgagaccatcaacttccagacactcactgccttc
tgcaataccttccacatcttgagacccaccaaggcaccaggcttcgtgtacgcctggctg
gagctcatctcccatcgcatcttcattgccagaatgctcgcccacacaccacagcagaag
ggttggcccatgtacgcacagctgctgatcgatctcttcaagtacctggcacctttcctg
aggaatgtagaactcaacaaacctatgcaaatcctctacaagggtacactgcgagtgctc
ctggtcctgctgcacgacttcccagagttcctgtgtgactatcactacggcttctgtgac
gttattccaccaaactgcatccagctccgcaacctcatcctcagtgccttcccacgcaac
atgaggctcccggaccccttcacacccaatctcaaggtggacatgctgagtgagatcaac
atcgctccccgtatcctcaccaacttcacgggcgtcatgccctcccagttcaagaaggac
ctggactcgtatctgaagacccgatcaccagtcactttcctctcagagctgcgcagcaac
ctgcaggtgtccaatgagccaggaaatcgctacaacatccagctgatcaatgccctggtg
ctgtacgtaggcactcaggccatcgctcacatccacaacaagggcagcacgccctccatg
agcaccatcactcactctgcacacatggacatcttccagaacctggccgtggacctggac
actgaggggcgttacctgttcctgaacgcgatcgcaaatcagctgcgttaccccaacagt
cacacccactacttcagctgcaccatgctctacctgtttgctgaagccaacacagaggcc
atccaagagcagatcaccagggttctgctggagaggctgatcgtgaacaggcctcacccc
tggggtctcctcatcaccttcatcgagctgatcaagaaccctgccttcaagttctggagc
cacgactttgtgcactgtgccccagagattgaaaagctgttccagtccgtggcccagtgc
tgcatgggacagaagcaggcccagcaggtgatggaaggtaccggtgccagctag
DBGET
integrated database retrieval system
