Pleuronectes platessa (European plaice): 128456391
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Entry
128456391 CDS
T09923
Symbol
col6a3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04510
Focal adhesion
pplt04512
ECM-receptor interaction
pplt04518
Integrin signaling
pplt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128456391 (col6a3)
04518 Integrin signaling
128456391 (col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128456391 (col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128456391 (col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pplt04147
]
128456391 (col6a3)
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128456391 (col6a3)
Exosome [BR:
pplt04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128456391 (col6a3)
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128456391 (col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
128456391 (col6a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
vWA_SIBA-E
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
128456391
NCBI-ProteinID:
XP_053296518
LinkDB
All DBs
Position
14:complement(23238630..23304705)
Genome browser
AA seq
3167 aa
AA seq
DB search
MRRHRLLPLCALLGVLFAGFLPKLDAQEDCAQGLAADVYFLVDSSWSIGKENYEHVRHFL
YSLIQSLHQVGEDRFKFALVQYNTRPETEFQLDRYPTTQGVLAHIKHMSYRGGGTRTGLG
LEFLIRTHLTMASGSRAAEGVAQVVVVLTDGRSQDDVLEPAQVLRMAGVEVFAVGVQDAV
ESELREMASRPHDTHVFSVDSFLSLRDITQDLVVGLCGAVAQSWGAPVANEAPVAGGGTA
QDSADLIILIDGSQNVGAANFPFVRDLVLRIIERLDVGIDTVRVALALYNSNPEIKFYLN
SYESKSSVLEAVKGLAYSGGDESNLGAALEEVAESLLGESAGGRADEGVPQMLVVISAGS
STDDTGAGDRALKRAGVITFGVTIGDTATADLEVVATDKSFVLLAPDFRAVANMGDQLLP
YINGVVQRTIIVHTEFTEVLVVGKRDIIFLIDSTMGATLINSVREFIKRFIDRMPIGPDD
VQVGVAMFSNNPRLEIDLNSHGSRDALIAGLGAIKPRPGQSVNIGAALDFVRTRMIVPEK
GSRIQQGIPQLLLLLTSKKSSDSVETPARELQKMGVLTLAAGSKAADEQELKQIAFTESI
VFMLRDFRGLLRPPIPDPIIGALSTLAGVVVTEVPTEPVVEITTVQTQRVIRDIVFLVDG
SNYIGNNNWPYVRDFMINVVNQLDVRPERVRIGLVQFARDPRIEFYLNSYENREDVVNKI
SQLRLTGGSVLNTGAAMNHALAKMFSASAGSRRKQGVQQVLVLITGGPSQDEVKSVADKA
ALERVLTFTVSSGQADETLLRSVAFVPDLAYHDSSFSTLPAMAEVIMPKLITVVGDTDVT
YIEETEEPVTVQGMERDVAFLIDGTDNVRADFAYVRDFIIKVIEPLDIAQDRVRISVVQH
SERPTASFFLNTYQNKEEVIRAVNSLAPVGGRSLNTGAALRFMKDTVMSEANGSRAKQNV
PQFLIVLTGGRSRDNVKEPAGQLKTEGVVPFGVGVKDADPRQIQDISHNPSFAFNVKEFS
QLSTVPQKLNNYVSLPREQLTVVLQQAESQGPRKDIIFLVDGSDGVGRDFPVIQEFIRRV
VESLNVGENKIRIGVIQYGDSAQADMYLNSHTTKEGVLNAVRQMRQRGGRQRNLGQGLQF
INQDVLTAARGSRKQEGVPQFVIVVSSGPSTDDINRSATTLKQSRVLPFSIGTRDVNPTE
LRVVSYVPNFAFTVDDLPSLDTVRENLITTLTEMSNDDIATLRPVFPTYTSVTPAPAQGV
KRDVVFLIDGTTAGRSEFPAIRDMIRRVTEKLDVGLDKVRVSVVQYAEEPVSEFLLNEHS
NKQELRQAVTRLQSRGGNRLNTGHALGWVSRRIYQRSAGSRIEEGVPQFLILVTGGKSSD
DVSTSADQLKRSHVAPLAIGSRNADPDELRQISLKPELVFTVDSFQQLPRVETRLIDSVK
TISTDDIITYEPPTEVSLDLGKKDIIFLIDGSDNTGDNGIAHIRDFILNIVQQLDVQPDQ
VRVSVVQYADKVKSEFSLNSHNNKPAVISAIKRLRQMGGRSSDLADAIKYVMENELKPSA
GVRLSEASQHLVVLTGGRSPQDVSMYGPLLKGRRVNCIGVGAAGADTRQLGQIATSSEDV
LQVPNFPGLSAIRERFIARLSGTLPVEQPPYVYDPDLPQAKKADIVFLVDGSINLGRDNF
KEVMNFVINLIDLFYTERDDLRIGLAHYAADVTDVFYLNTYKNRQDVMDAIERAEYKGGR
KINTGAAIRHVEDVHFTREKGSRKDEGIAQILMLVTGGRSADDGRTAALGLKKKGVRVFA
VGVGDIEDELEKIASESSTVARASTFLELSELNEQILETLDDEVKGKLCVGVQDGPKTCN
VEVLVGFDVSGRNIFSVQTNLQKKMEFILNTISQMERISCSSGQIPSVQVGMLAMDAASE
PVQLDFTNNAKELVVAFKALQSRGPFLLNGKTISAYTNRFNTRQDDVVKVVIHLTDGLDA
PYAEMKKRVDQLQQSGVNSFILVGLERVAKFEEAVLLEYGRGFRYTRPLRLNIMDLEYEL
REELDNIAERQCCGVACKCTGTRGDRGAVGQSGTKGGPGSGGGQGHPGDEGGPGERGPPG
VNGTQGFQGCPGQRGVKGSRGYSGEKGEFGEIGLDGINGEEGKSGVAGPGGDRGNPGRRG
PKGAKGQGGDRGEEGIRGDPGTSGQDNNQAGPKGDPGDAGPTGDAGQDGKKGGPGELGRR
GADGRRGSPGQPGPPGIPGVNGVQGEAGIGGSRGPSGPNGAPGPRGEDGNPGPRGPGGIP
GPVGDKGRRGFIGRKGEPGDPGPKGIIGPLGPRGEAGEDGRDGFGVAGPKGRKGDEGFPG
FPGIKGAAGDIGPEGGPGPKGNRGQRGVSGNIGSAGQKGEVGYSGPYGQKGPRGPGVVQC
DLVKKIRDNCPCCYGQLECPLYPTELAISLDASQNVDRRAFNNMRDAVLNLVRNITISES
NCPRGARVALTLYNSEVTTEVRFADAMKKRALVQRIEGLQTLQTNKERNLPSAMSFVAQN
TFKRVRSGFLMRKVAVFFVGGALGQVQGVTNAALRLHDAGIATLFLVSREERALTRALQI
NNTALAQVIVLPAPGSAQYNAVIQKVMSCHVCFDFCSPDQMCDYVPPLTTGRDRRSSTTD
VDIDMAFVLDSSDSTYPAVFTEIKRYIAHIVEHLEVSSNPTSAVHQARVSVIQQAPYEFI
QNKTGLPIHVDIGLTEHSSAQDIVTFLLEKTPQLEGGRALAAAIESTVEQVFDKAPLQRD
RRVLFLFVTGSVEEDEQQLVRIATEVKCRGFFLVILGVGGQLSAGDNRVLSRMASEPSDV
FFKRLDSLSQFYDKHLQTFSQLLPKYISIENAFYMSPEVSKNCKWFQSDQPLKNPFTSSQ
QHEKHQKQHENHQAVHPRKHKDTDELHVSNVTSSSLKLRWSSPDPKLFVYFEVVVTRLSD
HVLVLKTNVSGAELSVDNLQSAQTYHAVVTAHTAEGQVVSTRKGIITTKTAEHKPTSQGT
RTVKTKPLDIPETDPCSLDSEPGVPCKDYQAKWFFDRKSGICTQFWYGGCGGNENRFDTE
TLCLKHCMRSEPEPEPQSQVQQSEQVEILPAPAASTAVDICQLSKEEGSCAKFVLKWHFD
AASQGCARFWYGGCGGNQNRFDTFEKCVNACGKPAPLNRGVVAAMRT
NT seq
9504 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggcaccggttgttaccgctctgtgcgcttctgggcgtcctgttcgcaggattc
ctcccaaaactcgatgctcaggaagattgtgcacaagggttggcagcagatgtatacttt
ctagtggattcatcctggagtattggaaaggagaactatgagcatgtcagacattttcta
tacagcttgatacaatcgctgcaccaggttggagaggacaggtttaaatttgccctcgtg
cagtacaataccaggcccgagactgagttccagctcgaccgctacccaacaacacagggt
gtcctggcacacatcaagcatatgtcttatcgtggtgggggaacccgcactggcctgggc
ctggaattcttgatacgtacacacttgaccatggcatcgggcagccgtgctgctgaaggc
gtggcgcaggtggtggtggtgctaacagacgggcgatcccaggatgacgtgctggagccg
gctcaggtcctgcggatggcaggcgtggaggtgtttgcagttggagttcaggatgcagtg
gagtcggagctcagggagatggctagtcggcctcatgacactcatgttttcagtgtagat
tcattcctctccttgcgggacataacccaagatttagtagtgggtctttgcggcgcagtg
gcccagtcatggggggctccggtggcaaatgaggcccctgtggctggaggagggacagca
caagattcagccgacctaataatcttaattgatggatcacagaacgttggagcggcgaac
ttcccctttgtgcgtgatttggttttgagaatcattgagcgccttgatgtgggcattgac
accgttcgggtggccttggccctatacaactccaacccagagataaagttctatctaaat
agctatgagagcaaatcgtcagtcctggaagccgtgaagggccttgcctactcagggggc
gacgaatctaaccttggggctgccttggaggaagtggccgagagcctattgggcgaatca
gctgggggcagggcagatgagggtgtgccccagatgctggtggttataagtgctgggtca
tccacagacgatactggtgctggtgaccgggcccttaagagggctggcgtcatcacgttc
ggcgtgacgattggtgacaccgccactgcagatctggaagtagtagctacagacaaaagt
tttgtcctgttggcccctgatttcagagcagtggcaaacatgggtgaccagctgctccca
tacattaacggggtggtccagcgcaccattatagttcatactgagttcacagaagtcttg
gtagttggaaaacgagacataattttcctcatcgacagtaccatgggtgcaacgctaatc
aactccgtgcgcgaattcatcaagcggtttatcgaccgcatgccaattggtcccgatgat
gttcaagtgggcgtggccatgttcagcaataaccctcgcctcgagatagatctcaactcc
catggatccagagatgccttgattgccggcttgggcgccatcaaaccaagacctggacag
agtgtcaatattggagcagctttggactttgtgcgaacccgaatgatagtccccgagaag
ggcagtcgtattcaacaggggataccgcaacttttactgctgttgaccagtaaaaagtcc
agtgacagtgtggaaacacctgccagggaattgcaaaaaatgggtgtcctgaccctggcc
gcaggctccaaggctgctgacgagcaggaactgaagcagattgccttcactgagagcatc
gtgttcatgctgagggacttccgtggactgcttcgcccacccatcccagatccaatcatt
ggtgcactctccactctagctggggtggttgtgactgaagtacccacagagccagtggtg
gagataaccacagtgcagactcaaagagtgatcagagacattgtcttccttgtggatggc
tcaaactacatcggcaataataactggccctatgtgagagacttcatgatcaatgtggtc
aaccagttagatgtacgccctgaaagggtccggattggcctcgtgcagtttgctagagat
ccaagaattgaattctatctgaacagctacgaaaacagagaagatgttgtgaataaaatc
tctcaactcaggctgactggaggctcagttttgaatacaggagctgccatgaaccatgcc
cttgccaaaatgttttcggcctcagccgggtcacgcaggaagcaaggagtccagcaggtg
ttggttctgatcacaggtggtccatcccaggatgaggtcaagagcgtagctgataaggcg
gctctggaaagagttttgaccttcacggtcagttctgggcaagcagatgaaaccctcctg
agatcagtggcctttgttccagatttggcttatcatgacagtagcttctctactttacca
gctatggcagaagtcatcatgccaaagttgataacagtggttggcgatacagatgtgacc
tatatagaggaaacagaagaacctgttactgttcagggaatggaaagggatgttgccttc
ctcattgacggcacagacaatgttcgagcagactttgcctacgtccgggattttataatt
aaagtaattgaaccactcgacattgcgcaagacagggtaaggatttcagtggttcaacat
agtgagaggccaaccgcaagttttttcctaaacacttatcaaaacaaagaggaggtgata
agagctgtcaactcattggcacccgttggtggacgaagtctcaacacaggcgctgctcta
agattcatgaaggacaccgtcatgtctgaagcgaacggcagccgagctaagcaaaacgtc
cctcagtttctaatcgttttgactggaggcaggtccagggacaatgtgaaggagcctgct
ggtcaattgaagacagagggagtcgtaccatttggtgttggtgtcaaggatgcagaccca
aggcagattcaggacatttcacacaacccttcctttgccttcaatgtgaaggaattcagt
cagcttagcactgtaccacaaaagctcaataactacgtgagcctccccagggaacagctt
accgttgtcctgcagcaagcggagtcgcaggggccccggaaggacatcatattccttgtt
gatggatccgatggtgttggacgggactttcctgtcattcaggagttcatccgcagggtc
gtggagagtctcaatgtgggcgagaataagatccggatcggtgtcattcagtacggtgac
tctgctcaggctgatatgtatctgaactcgcatacaaccaaagaaggcgttttgaatgct
gtaaggcaaatgaggcaacgaggaggaagacaacgtaacctgggtcagggcttgcagttt
atcaatcaggatgttcttacagcagcccgtggaagcaggaagcaagagggtgtaccacag
tttgtaatcgtcgtctccagtgggccgtccactgatgacatcaaccgttcagcgactacc
ctcaaacagtcgagagttcttcccttcagcattgggaccagggatgttaaccctacagag
ctgcgggttgtttcgtatgtgcctaactttgcctttactgtcgatgacctccctagcctc
gacacagtccgagaaaacttaatcaccactctcacggagatgtcaaacgatgacatcgcc
acgctgcgtccagtatttccaacctatacatcggtgacaccagcacccgcacaaggagtg
aagagggatgttgtatttctcattgacgggacgacagctggacgtagcgagttccctgcc
atccgggacatgataagaagagttacggagaagctggatgttggattggataaagtcaga
gtttctgtggttcagtacgctgaagagccagtgtccgaatttcttctgaatgaacactcc
aacaaacaagagctacgccaggctgtgacgaggcttcaaagcagaggtggaaaccgccta
aacacaggacatgctcttgggtgggtatccagacgcatctaccagaggtcagcaggaagc
cgcattgaagagggtgttcctcagttcctcattctagttactggtggcaagtcatcagat
gatgtgtccacctcagctgaccagcttaagagaagccatgttgctcctcttgccattggt
tcaaggaacgcagacccagatgaactgagacagatttccctgaagcccgaacttgtattt
acagttgacagtttccagcagcttccgagagtggagacccggctcattgactctgtgaaa
acaatatccacagatgatatcattacttatgaaccccccacggaagtttccctagatctt
gggaagaaggatattatcttccttattgatggctcagacaatactggtgataatggcatt
gctcacatccgggacttcatcctcaacattgttcaacaactcgatgtgcagcctgatcaa
gttcgagtgtctgttgtccagtatgcggacaaagtaaaatccgagttttcacttaactca
cacaacaacaagccagctgttatttctgccatcaaaagacttcgccagatgggtggccgg
tcatcagacctggctgatgccattaaatatgtcatggagaatgagttaaaaccctctgct
ggtgttcgtctgtctgaggcttcccagcatcttgtggttctcacaggtggacgctctccc
caagatgttagtatgtatggacctctgcttaagggccgccgggtaaactgcatcggtgtt
ggagctgcaggtgctgacacaagacagctaggccaaattgccaccagctcagaagatgtc
cttcaggtccctaatttcccaggtctgtcggcaatcagggagaggtttattgccaggctg
agtgggactttgccagtggaacaacccccatacgtctacgatccagacctgcctcaagct
aagaaggctgatatcgtctttttagtggatggctccatcaacttgggccgggataacttc
aaagaagtgatgaattttgtcatcaacctaattgacctgttctacactgagagagacgac
ctgcggattggactggcacattacgcggcagatgtgaccgacgtcttttacctcaacaca
tacaagaacaggcaagacgttatggatgccattgaacgagcagagtacaaaggtggacgc
aagatcaacactggggcagccattcgccatgttgaagatgttcactttaccagagaaaag
ggaagtaggaaggacgagggaattgctcagattctaatgcttgtgactggaggacgctca
gcagatgacggcagaacagcagctcttggtctgaagaaaaaaggtgtgagagtgtttgcc
gtaggagtgggtgacattgaggatgaactagaaaaaatagcaagcgagtcttctaccgtg
gctcgagcaagcacctttttagagctttcagagctcaatgagcaaatcctggagacactt
gatgatgaagtgaaggggaagctgtgtgttggggtgcaagacggtcctaaaacctgcaat
gtggaggtactggtgggcttcgatgtttctggccggaacatcttcagtgttcagactaat
ctccagaagaagatggaattcattctaaacacgatttcccaaatggaaaggattagctgc
tcatccgggcagattccctctgtgcaagtgggcatgctggccatggacgctgcctccgag
cccgtccagctcgatttcaccaacaatgctaaagagctcgttgtggccttcaaagcgctg
cagagtcgtggccccttcctcctcaatggcaagaccatctcagcttacaccaacagattc
aacaccagacaggacgatgttgtcaaggttgtcatacatctgactgatggtcttgacgcc
ccatatgctgaaatgaaaaagcgagttgaccagcttcagcaatcaggagtgaacagtttc
attctggtcgggctggagcgggtggccaaatttgaggaggctgtgctgttggaatacggg
cgtggcttcaggtacaccagacccttacgtctcaatatcatggacttggagtatgagctc
agagaggaactggacaatattgctgaaagacagtgttgtggtgttgcttgcaaatgcact
ggcaccagaggagaccgaggagccgtcggacagtcagggacgaagggcggtccggggtca
ggaggaggccaaggtcatcctggagatgagggtggacctggagagagaggtcctcctggt
gtgaacggaacacagggtttccagggatgtcctgggcagagaggtgtcaagggttctcgt
gggtactcaggagaaaagggtgaatttggagaaattggactcgatggcatcaatggagag
gagggcaaaagtggagtcgctggaccgggaggagacagaggaaacccggggagaagaggt
cccaaaggtgccaaaggacaagggggagaccgaggggaggagggaatcagaggagaccct
ggcacaagtggacaagacaacaaccaagcaggaccgaaaggagaccccggtgatgctgga
ccaacgggagatgctggtcaggatggaaagaagggaggccctggtgaactcggacgacgg
ggagctgatggcaggagaggctcacctggacagcctggaccacctggaatacccggagtc
aatggtgtgcagggagaggccggcatcggaggatccagaggtccttctggaccgaatggt
gccccaggacccagaggagaagatggaaaccctggacccaggggtcctggtggtatccca
ggtcctgttggggacaagggcaggagaggatttattggtcgtaagggagagccaggagat
ccaggaccaaaggggatcatcggacctcttggcccccggggtgaagctggtgaagatggt
agagatggatttggtgtcgcagggcccaaaggaagaaagggtgatgaaggcttccctgga
ttccccggaatcaagggagcagctggtgacattggccctgaaggtggacctggacccaaa
ggaaaccgtggacagaggggtgtctctgggaacatcggttcagctggacagaaaggagag
gtcggatattctgggccatatggtcagaaagggccgagaggaccaggggttgtgcaatgt
gacctggtgaagaagattagagacaactgcccttgctgttatggtcagctggaatgcccg
ctctaccccactgagctggccatctccctggacgcctctcagaatgtcgaccgcagagct
ttcaacaacatgcgggacgcggtcctgaacctggtccggaacatcaccatctctgagagc
aactgcccgagaggggcccgcgtcgctttgaccttgtacaacagcgaagtcaccaccgag
gttcggttcgccgacgcgatgaagaagcgtgcgctggtccaacgcatcgagggacttcag
accctgcagaccaacaaggagcgcaacctgccgtcggccatgagcttcgtggcccagaac
accttcaagagggtgcgcagcggcttcctcatgaggaaggtggccgtcttctttgtcggt
ggggccctcggtcaggttcaaggagttactaatgcggctctccgcctgcatgatgctgga
atcgccactctgttcttggtcagccgtgaggaaagagccctcaccagagcgctgcagatc
aataacacagccctggcccaggtgattgtgctccccgctcctggcagtgcacagtacaat
gcagtcatccaaaaggttatgagctgccatgtctgctttgacttctgctctccggaccaa
atgtgtgactacgtgcccccattgacaaccggccgagatcggaggtcttccaccacagac
gtggacatcgacatggccttcgtcctggacagctccgactccacctatccagctgtcttc
actgagatcaaacgctacatcgctcacatcgtagaacacctagaggtgtcttccaatccc
acatcagctgttcaccaagccagagtgtctgtgatccagcaggcgccttacgagttcatc
cagaacaaaaccggccttcccatccatgtggatatcggcttgactgagcacagttcagct
caggacatcgtcacgttcctgctggagaagacaccgcagctcgagggtggcagggccctg
gcagctgccatcgaatccacggtggagcaggtgttcgacaaggcgcctctccagcgggac
aggagagtgctgttcctctttgtgacaggaagcgtcgaggaagacgagcagcagctggtg
cgcatcgccaccgaggtcaagtgcagaggcttcttcctggtcatcctgggagtgggaggg
cagctgagtgccggagacaaccgggtgttgtcccgcatggccagtgagccgtcggatgtc
ttcttcaagaggctggacagcctttcacagttttatgacaaacacctccagaccttcagc
caactgctgccaaagtacatcagcattgaaaacgcgttctacatgtcccccgaagtctcc
aaaaactgcaagtggttccagagtgaccagcccctgaagaaccccttcacttcatcacag
caacacgagaagcaccagaaacagcatgaaaatcatcaagcagttcatccaaggaagcac
aaagatacagatgagctgcacgtctccaacgtcacctccagcagcttgaagctgcgttgg
agcagcccggaccccaaactcttcgtctactttgaggtggtggtgacgcgtttgtccgac
cacgtcctcgtgctgaagaccaacgtgtccggcgctgagctctctgtggacaacctgcaa
agcgctcagacgtatcacgctgtggtcactgcccacactgcagagggacaagtggtctcc
acccgcaaaggcatcatcactaccaaaacagcagagcataagccgaccagccaaggaacc
cgcactgtaaagaccaaacctctggacataccggaaactgacccatgctcacttgactct
gaacctggagtgccgtgcaaagactatcaggctaaatggttctttgacagaaagagcggg
atctgtacacagttctggtacggaggctgtggcggcaatgagaataggttcgacactgag
accctctgcttgaaacactgcatgaggtcagagcccgagcccgagcctcagtcccaggtg
cagcagagtgagcaggtggagatcctcccggctcctgctgcctctacagctgtagacatc
tgccagctttccaaagaggaaggttcatgtgccaagtttgtcctgaagtggcacttcgac
gccgccagccagggctgcgcacgcttctggtacggaggctgcggcggaaaccagaatcgc
ttcgacacctttgaaaagtgtgtgaacgcctgtgggaaaccagcgccactcaaccgagga
gtcgtcgctgcaatgagaacatag
DBGET
integrated database retrieval system
