Pectobacterium polaris: BJK05_17690
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Entry
BJK05_17690 CDS
T05195
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJK05_17690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoa03021
]
BJK05_17690
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_17690
Enzymes [BR:
ppoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJK05_17690
Transcription machinery [BR:
ppoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJK05_17690
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJK05_17690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
ASY81715
UniProt:
A0AAQ0WW10
LinkDB
All DBs
Position
4021909..4025937
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRENVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGVEADKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQKAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacag
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggtcagtacggtttggaagctgcattccgttctgttttccctataaaa
agctatagcggtaattcagagctgcaatacgttagctatcgcttgggcgagccagtattt
gacgttaaagaatgtcagatccgtggtgtgacgttctctgcgccgctacgcgtaaaactg
cgcctggtgatctacgagcgcgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgaccgataacggtaccttcgtgatcaacggt
actgagcgcgtaatcgtgtctcagttgcaccgtagtccaggtgtgttcttcgatagcgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggatttcgagtttgatccgaaggataacctgtttgtccgtatcgaccgt
cgccgcaaattgcctgcgaccattatcctgcgcgcgctgggttattccaccgaacagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataagttgcagatggat
ctggttcctgagcgtctgcgtggtgaaaccgcatcgtttgatattgaagcgaacggtaaa
gtttatatcgaaaaaggtcgccgcatcactgcgcgtcatatccgtcagttagagaaagac
ggtattgagcgcattgaagtgcctgttgaatatatcgctggcaaagtactgtccaaagat
tatatcgacgagagcaccggtgaactgatcggcgcagccaacatggagctgtcgctggat
ctgctggctaaactgagccagtctggtcacaaacgtattgagacactgttcaccaacgat
cttgatcatggtgcatacatgtctgaaaccgtgcgcgtcgatccgtcaaacgatcgtctg
agtgcgctggttgaaatctatcgcatgatgcgtcctggtgaaccaccaacgcgtgaagca
gcagaaacgctgtttgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgttacgtgatgagatcgaaggttccggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtggatgacatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgtgctgtaaaagagcgtctgtct
ctgggcgacctcgatacgctgatgccacaggacatgatcaacgccaagccgatttcggct
gccgtgaaagagttcttcggttcaagtcaactgtcacagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgtcgtatctctgcactgggcccaggcggtctgacgcgt
gaacgtgctggctttgaagttcgtgacgtacacccgactcactacggtcgcgtttgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtttatgcgcaa
acgaacgaatacggtttccttgaaaccccgtatcgtcgtgtgcgtgaaaatgtggtgacg
gatgagatccattacctgtctgcgattgaagaaggtaacttcgttatcgcacaggcgaac
accaatttggacgaagaaggccgcttcatcgacgaactggttacctgccgtaacaaaggc
gagtccagcttgttcagccgcgatcaggttgaatacatggacgtttccacacagcaggtg
gtttccgtcggtgcatccctgattccgttcttggaacacgatgacgccaaccgtgccctg
atgggtgcgaacatgcaacgtcaggccgttccgaccctgcgcgctgataagccgctggtt
ggtaccggtatggaacgcgctgttgcggttgactccggtgtaactgccgtagccaaacgt
ggtggtacagtacagtacgtcgatgcttctcgtattgtaatccgcgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtgtcactgggtgagccggtagaacgtggt
gacgttctggcagatggcccgtccaccgatctgggtgaactggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagatcgctttacgaccattcacattcaggaactggcctgtgtgtct
cgtgacaccaagttagggcctgaagaaattactgcggacatcccgaacgtgggtgaagct
gcactttccaaactggatgagtctggcatcgtttacatcggtgctgaagtgaccggcggt
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaagtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagaattgcagattctggaagcgggcctgtttgcacgtatccacgctgtgctggtt
tccggcggcgtagaagctgacaaactggacaaactgccgcgcgagcgctggttggaactg
ggtctgactgatgaagataaacagaatcagttggaacagctggcagaacagtatgatgag
ctgaagcacgagtttgagaaaaaactcgaagctaagcgccgtaaaatcacccaaggcgat
gatctggcaccgggcgtgctgaaaatcgttaaggtttatctggccgttaaacgtcagatc
caaccgggtgacaagatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccttcacgtatgaacatcggtcagattctggaaacccacttgggtatggct
gcgaaaggtatcggcgagaaaatcaacgccatgctcaaacagcacgaagaagtgaccaaa
ctgcgtgagttcatccagaaagcctatgacctgggcgacgatgtgcgtcagaaagtcgac
ctgagcactttctcagacgaagaagttatgcgtctggctgaaaacctgaagaaaggtatg
ccaattgcaacgccagtatttgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattaccctgtacgatggacgtaccggtgagcaa
tttgagcgtcaagttacagtaggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgcccgttccaccggttcttatagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcttataccctgcaagaaatgttgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataaaaacatcgtggatggcaatcatcagatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaaaagtaa
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