Pollicipes pollicipes (gooseneck barnacle): 119090106
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Entry
119090106 CDS
T08250
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119090106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119090106
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119090106
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119090106
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
119090106
NCBI-ProteinID:
XP_037068795
LinkDB
All DBs
Position
Unknown
AA seq
2209 aa
AA seq
DB search
MNLDSPSFALIHISNLVANLAKKNYKVSTQEIAQLVSAHGADAQTHLLRCLFSHVVCDGS
RSVAKDNPQLQLLQQECASLATRPNFVHLLCYAVDHRAFRQKNRPAQFLQGLSKTLKLKK
SEEVAFAIALLHSKDIETSQQAEQFIQQKLPDLIKNYIDSADCSSFAEEGGLHESSPELL
HRLVSWLLYAPPEQLDKAADSQEAFVEAVRKDFPRELVPAVLAPLIYSESADIPVDKIRS
PANMAKNLLDGSLADFVLEVGYNLCASVEECRRHLVNHGASEVTAPAVARCLGAMVRTYT
GLADQVPIQSLQPAASIGAADKPKDGPQTWNVDVFVKAVHELAPSIQWKEVVYHLDHPGF
QVKDRMALRLLTQALQLGLQLQGARADAFPVGVLYRVWKNADSQLSYINQILKNPDVFCL
ADYQCYMVDVAQLKVPPEKDNKELNTWRCTELMQLLLHLADSGHTCAVQELLKFPKQSGQ
DVLALNLLATGSSSDLAQELLSNLFLVFLTGHHPNSAAVLHQAWHTPQNTSAVRTMLMHT
MAEWYRQGENDQGRLSRILDVAQDLKALSLLLNYQAMPFVIDLACLASRREYLKLDKWLS
DKIHEHGEVFITACVKFLQRRVSQSLGGPLKELEPPLKALEPPLKAPLPPEMVATMLSVL
HARAPAAGVSQELNEAILTMVGNASQLFPALGSESLSGAGPPTSALHGLARSAQSDVGPF
QSEAAALSKEVEEEANSNFQRIYNHPPHPTLSIEEVLDMLKRFQDSNVPREREVFACMLR
SLMDEYKFFPQYPDKELYITAQLFGGIIEHNLVTDYIGLGLALRYVLDAVKKPPGSKMYN
FGIVALDRFKHRLREYPQYCQHLATVEHFSQFPRHLVDYVECGMRSQEPLSRPDGPVLPP
HLQALVADGGAPPASSAPSAAVTAAPVPAPRATLVTTALVSGRPSIANTTNIETLVNALP
EETAPSEAVQDKVGFIFNNLSQLNLSQKCEELLELMDKEYWSWFSQYVVMRRVSIEPNFH
TLYANFLDAMRLPELVQTVVRELHRNIQVLLRADKGVEKFNDRTILKNLGHWLGLMTIAK
NKPILQVDLDLKALVVEAYHLGMHELLYIVPFVAKVLESCAKSKIFKPPNPWTMGLMNLL
AELHQERDLKLNLKFEVEVLCKTLSLDCEPPAAVEPRFGFGDLNTSSIGGLAPHITISVA
LPLFQSNPQLKQIVLPAVERTVQDWLPRAVERNCKLAVNTVEQVVKKDFALDPDEMKMRT
AAQQMVMNLTAGLTLINCRDHLTVSISNNIKSSLLSTVRAATPQQKEFMEQTANMVAADN
VELACCFIQKTAVEKAILEIDKRLAGEYELRKLARAEGRRFREPVAAGYQESRMPEPIRL
KMMSPQQMAVYEEFTRVVPGFALSGEPPPPQPPPPLPPLPPGPPQPGDELGAIMDKVALE
LQAVVQALHPAATGSAYAQTLGRLAEDVTLARTSRDVNAHVHLIKLAVEGLLEHTPQLPA
DSEMGLRYRDSHLLVLRALQNPRVYGIQWVQKHVTSFVSECRVDVRLNGDALEVLVRSGL
VSLPQLDAQLAHAMETGNYNAVFLVMQLLQAFFIDDRVSIVTENDLVNTIEALSKIAQQP
GCPENIPHLLEMVRGGGGTGGVGHEVPFTPDRSPGGPTAHIHKGISQAREFDDPPGMQEK
TEYLLREWVQLYHAPTSGRDSTKAFTNIVHQMNVQGILKTDDLITRFFRLSTQMCVDLCY
RALTDPAAMTPAMVRAKCFRTLDAFVRLIALLVKHSGESPHAVSKINLLNKVLGIVTGVL
LQDHEVRKTEFQQLPYHRIFIMLLLELNAPETVLEAINFQVLTAFCNVLHILRPEKAPGF
AYAWLDIVSHRVFIGRMLAVTPQHKGWGPYAQLLIDLFNFLSPFLRNAELAKPITILYKG
CLRVLLVLLHDFPEFLCDYHYNFCDVIPPNCIQMRNLVLSAFPRNMPPPDPFTSKLQVDM
IPEIREAPMIQTNFASLIQPPSFKNELDTYLKTRTPVTFVTDLRSTLQTAAEPGCRYNIQ
LINALVLYVGTQAITAIQSKGLQPSKQTITHSSHMDIFQSLAVDLDTEGRYLFLNAIANQ
LRYPNSHTNYFLNLLLYLFAEANTAAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
TFNFWNHEFVHCAPEIEKLFDSVARSCAAQGQKVTALRGGGQQTVGGAE
NT seq
6630 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggattcgccctcttttgcactgattcacatcagtaatcttgtggcgaattta
gcaaaaaagaattataaagtgtcaactcaagaaattgctcagctggtcagcgctcacggt
gcggacgcccagacccatctgctgcgctgtctgttctcgcacgtcgtctgcgacggcagc
cggagcgtcgccaaggacaacccgcagctgcagctgctgcagcaggagtgcgccagcctc
gccacccggcccaacttcgtccacctgctctgttacgccgtcgaccaccgtgccttcagg
caaaagaatcgtcctgctcagttcctccaggggctgtcaaaaacgctcaagctgaagaag
tcagaagaagttgcctttgcgatcgcacttctccactcaaaggacatcgaaacaagccaa
caagctgagcagttcatccagcagaaacttcctgacctcatcaagaactacatcgattcg
gccgactgttcgagcttcgctgaggagggcggcctgcacgagtcgtcgccggagctgctg
caccggctcgtctcctggctgctgtacgcgccgcccgagcagctcgacaaggcggccgac
tctcaggaggcgttcgtcgaggcggtgcgcaaagacttcccgcgcgagctggtgccggcc
gttctagcgccgctcatctactcggagagcgctgacatccccgtcgacaagatccggagc
ccagccaacatggccaaaaacctgctggacggctcgctggccgacttcgtgctggaggtg
ggctacaacctgtgcgcctcggtggaagagtgccgccgccacctggtgaaccacggtgcc
tccgaagtgacggcgccggcggtggcgcgctgcctgggcgccatggtgcgcacctacacg
ggcctggccgaccaggtgcccatccagagcctgcagccggccgcctccatcggggcggcc
gacaagcccaaggacgggccgcagacctggaacgtggacgtgttcgtcaaggctgttcac
gagctggcgccatcgatccagtggaaggaggtggtgtaccacctggaccacccgggcttc
caggtgaaggaccggatggcgctgcggctgctgacgcaggcgctccagctgggcctccag
ctgcagggcgcccgcgccgacgccttccccgtcggggtgctgtaccgcgtctggaaaaat
gccgacagccagctgtcgtacatcaaccagatcctgaagaaccctgacgtgttctgtctg
gccgactaccagtgctacatggtggacgtggcgcagctcaaggtgccgccggagaaggac
aacaaggagctgaacacatggcggtgcacggagctgatgcagctgctgctgcacctggct
gacagcggccacacttgcgccgtccaggagctcctcaagttccccaagcagagcgggcag
gacgtgctggcgctcaacctgctggccaccggcagcagctcggacctcgcccaggagctg
ctctccaacctcttcctcgtcttcctcaccggccaccacccgaacagcgcggccgtgctg
caccaggcctggcacacgccgcagaacacgagcgccgtgcgcaccatgctgatgcacacc
atggccgagtggtaccgccagggcgagaacgaccagggccgactgtcgcgcatcctggac
gtggcgcaagacctcaaggcgctgtcgttgctgctgaactaccaggccatgccgttcgtc
atcgatctggcgtgcctggcctcgcgccgcgagtacctgaagttggacaagtggctatcg
gacaagatccacgagcacggcgaggtcttcatcaccgcctgcgtcaaattcctgcagcgg
cgcgtctctcagagcctgggtgggccgctgaaggagctggagccgccgctgaaggcgctg
gagccgccgctgaaggcgccgctgccgcccgagatggtggccaccatgctgagcgtgctg
cacgcgcgggcgccggccgccggcgtcagccaggagctgaacgaggccatcctgacgatg
gtgggcaacgcgagccagctgttcccggcgctgggcagcgaatcgctgagtggcgccggg
ccgcccacctccgccctgcacgggctcgcccgcagcgcgcagtccgacgtcgggccgttc
cagtcggaggcggccgcgctctccaaggaggtggaggaggaggccaacagcaactttcag
cgcatctacaaccacccgccgcatccgacactctccatcgaggaagtgctcgacatgctg
aagcggttccaggacagcaacgtcccgcgggagcgcgaggtttttgcctgcatgctgcgc
agcctgatggacgagtacaagttcttcccgcagtatcccgacaaggagctgtatatcacg
gcacagctgttcggcggcatcattgaacacaacctagtcacggactacataggtctgggc
ctggcgctgcgctacgtgctggatgccgtgaagaagccgcccggctccaagatgtacaac
tttggcatcgtagcgctggaccgcttcaagcaccggctgagagagtacccgcagtactgc
cagcacctggccaccgtcgagcacttcagccagttcccgcgacacttggtggactacgtg
gagtgcgggatgcgctcccaggagccgctgagccggccggacggccccgtgctgccgccc
cacctgcaggcgctggtggccgacggcggcgcgccgccggcctcgtcggcgccgtcggcg
gcggtgacggcggcgccggtgccggcgccgcgcgccaccctggtcaccacggcgctggtg
tcgggccggccgtccatcgccaacacgaccaacatcgagacgctggtgaacgcgctgccg
gaggagacggcgcccagcgaggccgtccaggacaaggtcggcttcattttcaacaacctc
agccagctcaacctcagccagaagtgtgaagagctgctggagctgatggacaaggagtac
tggtcgtggttctctcagtacgtcgtcatgcgacgtgtgagcatcgagcccaacttccac
acgctgtacgcgaacttcctggacgctatgaggcttcccgagctggtgcagacggtggtg
cgcgagctgcacagaaacatccaggtactgctgcgggcagacaagggcgtggagaagttc
aacgatcgtacaatactcaagaacctgggccactggctaggactcatgaccatcgccaag
aacaagcccattcttcaggtcgacctggacctgaaggccctggtcgtggaggcctaccac
ctgggaatgcacgagcttctgtacatcgtgcctttcgtcgccaaggttctcgaatcgtgc
gccaaatcgaagatatttaagccgcccaacccgtggacgatgggtcttatgaacctgctg
gccgaactacatcaagagcgtgacctgaaactcaacctcaagttcgaggtggaggtcctc
tgcaagacactctctctcgactgtgaaccgccggccgccgtcgagccgcgcttcggcttc
ggcgacctcaacacgtccagcatcggcggcctggcgccgcacatcaccatcagtgtggcg
ctgccgctgttccagtcgaacccgcagctgaagcagatcgtgctgccggccgtggagcgc
accgtccaggactggctgccgcgtgccgtcgagcgcaactgcaagctcgcggtcaacacg
gtggagcaggtggtgaagaaggacttcgcgctggatccggacgagatgaagatgcgcacg
gccgcccagcagatggtgatgaatctgacggccgggctgacgctcatcaactgccgcgac
cacctcacagtctccataagcaacaacatcaagtcgtccctgctctccacggtccgagct
gccacgccgcagcagaaggagttcatggagcagacggccaacatggtggcggccgacaac
gtggagctggcctgctgcttcatccagaagacggccgtcgaaaaggccatcctcgagatc
gacaagcgactggctggggagtacgagctgcgcaagctggcgcgcgccgagggccgccgc
ttccgggagccggtcgccgccggctaccaggagtcgcgcatgccagagcccatccgactc
aagatgatgagcccgcagcagatggccgtgtacgaggagttcacgcgagtggtgcccggc
ttcgcgctgagcggcgagccgccgccgccgcagccgccgccgccgctgccgcctctgccg
cccgggccgccacaaccgggcgacgagctgggcgccatcatggacaaggtggcactggag
ctgcaggccgtcgtgcaggcgctgcacccggcggcgacgggcagcgcgtacgcgcagacg
ctgggccggctggctgaggacgtgacgctggccaggacgtcgcgggatgtcaacgcgcac
gtgcacctcatcaagctggccgtggagggcctgctggagcacacgcctcagctgccggcg
gactcggagatgggcctacggtaccgtgacagtcacctgctcgtgctgcgggcgctgcag
aacccgcgcgtctacggcattcagtgggtccagaaacacgtcaccagtttcgtctccgag
tgccgcgtggacgtgcgtctgaacggcgacgcgctcgaggtgctggtccgctccggtctg
gtgtcgctgccgcagctggacgcccagctggcgcacgccatggagacgggcaactacaac
gccgtcttcctagtgatgcagctgctgcaggcgttcttcatcgacgatcgggtgtcgatt
gtcaccgagaatgacctagtcaacaccatcgaggccctgagcaagatcgcgcaacagccc
ggctgtccggagaacatcccgcacctgctggaaatggtccgaggcggaggcggcaccggc
ggcgtggggcacgaggtgccgttcacgcccgaccgcagtccgggcggccccaccgcccac
atccacaagggcatctcgcaggcgcgcgagttcgacgacccgcccggcatgcaggagaag
accgagtacctgctgagggagtgggtgcagctgtaccacgcgcctacctctggccgagat
tccaccaaggccttcaccaacattgtgcatcagatgaacgtgcagggcatcctgaagacg
gacgacctgatcacgcgcttcttccggctgtcgacgcagatgtgcgtggacctgtgctac
cgggcgctcaccgacccggccgccatgacgccggctatggtgcgcgccaagtgtttccgc
acgctggacgccttcgtgcgcctgatcgcgctgctggtcaagcacagcggcgagtcgccg
cacgccgtctccaagatcaacctgcttaacaaggtgctcggcatcgtgacgggggtgctg
ctgcaggaccacgaggtgcgcaagaccgagttccagcagctgccctaccaccgcatcttc
atcatgctgctgctggagctcaacgcgccggagacggtcctggaagccattaacttccag
gtgctgacggcattctgcaacgtgctgcacatcctgcggccggagaaggcgcccgggttc
gcgtacgcctggctcgacatcgtctcgcaccgggtgttcatcggccgcatgctggccgtc
acgccacagcacaagggctgggggccgtacgcgcagctgctgatcgacctcttcaacttc
ctctcgccgttcctgcgcaacgctgagctggccaagcccatcaccatcctgtacaagggc
tgcctgcgcgtgctgctggtgctgctgcacgacttccccgagttcctctgcgactaccat
tacaacttctgcgacgtcatcccgccgaactgtatccagatgcgcaacctggtgctgtcg
gcgttcccgcggaacatgccgccgccggatccgttcaccagcaagctgcaggtggacatg
atccccgagatccgcgaggcgcccatgatccagaccaacttcgcctcgctcatccagccg
cccagcttcaaaaacgagctggacacgtacctgaagacgcgtacgccggtgacgttcgtc
acggacctgcgctccacgctgcagacggccgccgagcccggctgccgctacaacatccag
ctgatcaacgcgctggtgctgtacgtgggaacgcaggcgatcaccgccatccagagcaag
gggctgcagccgagcaagcagaccatcacgcacagttcgcacatggacatcttccagagc
ctggctgttgatctggacacggagggccggtacctgttcctgaacgccatcgccaaccag
ctgcgctacccgaacagccacaccaactacttcctcaacctgctgctctacctgttcgct
gaggccaacacggctgccatccaggagcagatcaccagggtgctgctggagcggctgatc
gtcaaccggccgcacccgtggggcctgctcatcactttcatcgagctcatcaagaacccg
acattcaacttctggaaccacgagttcgtgcactgcgcgcccgagatcgagaaactgttc
gacagcgtggcgcgctcgtgcgccgcccagggccagaaggtgacggcgctgcgcggtggc
ggccagcagacggtgggcggcgccgagtaa
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integrated database retrieval system
