Pollicipes pollicipes (gooseneck barnacle): 119105562
Help
Entry
119105562 CDS
T08250
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119105562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119105562
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119105562
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119105562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
WRW
Motif
Other DBs
NCBI-GeneID:
119105562
NCBI-ProteinID:
XP_037084918
LinkDB
All DBs
Position
Unknown
AA seq
2353 aa
AA seq
DB search
MNLDSLSFALIHINNLVGNLTKKNFKASCQEITQVVGAYGQEAQTHLLRRLCSHVPLDGA
GRASAKENPQLQLLQRQCAGLVTRPNFVHVLCQLADHPAVRQKNPSDTLLQELCRALKLG
KPEEVAFSIALLHSRNSDTVRHAEQFIQQKLPDLIKDYIDSADSTGASDQDGLQESSPEV
LHQLISWLLFAPPDQLDKAADSQESFLEAIRQDFPRDRVPVVLAPLIFAESTDIPVDKIR
SPGNMASNLLDGSLADFVLEVGYNLCASVEECRRHLVNHGASALTAPAVARCLGAMVRTY
TGLADQVPIQSLQPAASIWAADKPKDGPQTWNIDVFVRTVYELAPSIQWKEVVYHLDHPG
FQLKDRTAFCLLTQALRLGLQLQGVRADAFPVEVLYRVWKNADSQLSYIKQILKCWDVFC
LADYQCHMVDTSQLKMPPEKESREVNTWRCTELMQLLLHLAESGHSCAVQELLNFPLQSC
PDILSLNLLATGSTSHLAQELLSTLFPIFLTGHHPNSGAVLHQAWHSPQNGPAVQAMLAH
TMAEWYRQGEGDQARLSRVLDVAQDLKALSYLLNHQALPFVIDLACLASRREYLKLDKWV
SDKAMEHGEPFITACVKFLQRRVPQLSAGAAKDSDPPAKATLPADMAVTMLSVLHQRAAG
VGPELSDALLAMVGAAGQLLLGRQRQPPPPPSPFSPSPLSAQLFPAPGLEGVTGGLSALS
AAGSAPSPGLGLTSPFTLLGYISDAGAAGRSGPLQLLSAGSGPLAASQAPGPFGSAHALP
ARTSQSAELSLFQSEAAALSKEVEEEANSNFQRIYNHPPHPTLSIEEVLDMLKRYQDSSV
QREREVFTCMLRSLMDEYKFFPQYPDKELYVTAQLFGGIIEHSLVTNYNGLGLALRYVLD
AVKNQPGSKMYYFGVLALDRFRPRLREYPQYCQHLATIQHFSQFPRHLMEYVECGMRSQE
PAGRPEGSVLPAHLQSLLATPAAPAGSAASSAGARPTVLTAALVSGRPSIANTTNIETLV
KALQEAPPPSEVVQDKVGFIFNNLSQLNLSQKCEDLLAVMERDYWPWFAQYVVMRRVSIE
PNFHTLYANFMDALELPQLLQLCLRELYNNIQVLLRADKGVEKFNDRTILKNLGHWLGLM
TIAKNKPILQTDLDMKSLVIEAYHLGVQELLYVVPFVAKVLESSAKSKIFKPPNPWTLGL
MNLLAELHQEQDLKLNLKFEIEVLCKTLSLDVNELTPSQCLNDPLRQQRLPVQLKRPSLT
APPALPPPPPPPPPPPPPPPPPPPPPPPATSAPLAPPAGEAEEAAAAAVTEVVLPATAPR
FSFGDINTSSIAGLAPHITINVTLPLFQSNPQLKQIVRPAVERTVQDWLPRAVERNCKLA
VNTVEQVVKKDLALDPDELKMRAAAHQMVLSLTAGLTLINCRDHLAVSIATNVKAALLGT
VRTATTPQQQEFMEQTAGRVAADNVELACCFIQKTAVEKAILEVDKRLMAEYDLRKRARE
EGRRYVDPHMAVYHESHMPEPLRLAALTARQAAVFEEFARSVPGFAATPEVAPPASSGVA
LGPPPLRASQPPPPPPLPLPSAASDELPALLEKLSLELQAAVHSLHPAAAAAPQAQALAR
LAKDVSLSAAARDPNAHVHLVKMAVDGLLEYMSQLPADPDLAVRCRDGHLMVLRALQDPR
AHGPHWVQKHVTSLVIECREDQRLNLEAVDALIRARLVSTQQLDAHLAHAMEAGNYSLMG
LSLQLLQAFLVDDRSNAVTENDFMNTLDALAKLAQQPGCPENIPLLLEQVRAGGAGREPP
FPADRSPSGPTAHIHKGISQAREFDDPPDMQQKTEYLLREWVQLYHMPSSGRDSTKAFTI
IVHQMNVQGILKTDDLITRFFRLSTQMCVDLSYRALTDSAVGSPAMVRSKCFRTLDAFVR
LIALLVKHSGESPHAVSKINLLNKVLGIVTGVLLQDHEVRKTEFQQLPYHRIFIMLLLEL
NAPETVLEAINFQVLTAFCNVLHILRPEKAPGFAYAWLDIVSHRVFIGRMLAVTPQHKGW
GPYAQLLIDLFNFLSPFLRNAELAKPVTILYKGCLRVLLVLLHDFPEFLCDYHYNFCDVI
PPNCIQMRNLVLSAFPRNMPPPDPFTSKLQVDMIPEIREAPMIQTNFASLIQPPSFKNEL
DTYLKARTPGDVVTDLRSTLQTGAQPGSRYNVQLINALVLYVGTQAIAAIQSKGLQPSKQ
TIAHSSHMDIFQNLAEDVNVDGRYLFLNAIANQLRYPNSHTNYFLNLLLYLFAEANTAAI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWKHEFVHCAPEIEKLFDSVARSC
VALGQKGSHTAEL
NT seq
7062 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttgctctcatccacataaataatctggtgggtaatctc
acaaagaaaaacttcaaggcatcttgtcaagaaataacgcaggtggtgggtgcgtacgga
caggaagcccagacccacttgctgcgccgcctgtgttcgcacgtgccgctggacggtgcc
ggccgcgcctccgccaaggagaatccgcagctgcagctgctgcagcgccagtgtgccggc
ctcgtcacccggcccaacttcgtccacgtgctgtgtcagctggccgaccaccctgctgtg
cgccagaagaacccgtctgacacgcttctgcaggagctctgccgggcgctgaagctcggg
aagccggaggaggtcgcgttctccatcgcgctccttcactcccggaactcggacaccgtc
cggcacgccgagcagtttatccagcagaagcttcctgatctcatcaaggactacattgac
tcagctgactcgactggcgcgtcggaccaggacggtctgcaggagtcgtcgccggaggtg
ctgcatcaacttatctcctggctcctattcgcgccgcccgatcagctcgataaggcggcg
gactcgcaggagagctttctggaggcgatccggcaagacttcccgcgtgaccgcgtgcct
gtcgtgctcgcgccgctcatcttcgccgagagtaccgacattcctgtcgacaagatccgc
agcccgggcaacatggcctccaacctgctggacggctcgctggccgacttcgtgctggag
gtgggctacaacctgtgcgcgtcggtggaggagtgccgccgccacctggtgaaccacggc
gcctcggcgctgacggcgccggcggtggcgcgctgcctgggcgccatggtgcgcacctac
accggcctggccgaccaggtgcccatccagagcctgcagccggccgcctccatctgggcg
gccgacaagcccaaggacggcccgcagacgtggaacatcgacgtgttcgtacgcaccgtc
tacgagctggcgccgtcgatccagtggaaggaggtggtgtaccacctggaccacccgggc
ttccagctgaaggaccgcaccgccttctgcctgctgacccaggcgctgaggctcggtctc
cagctgcagggggttcgcgccgacgccttccctgtggaggtgctctaccgggtctggaag
aacgcggacagccagctgtcgtatatcaagcagatcctcaagtgctgggacgtgttctgt
ctggccgactaccagtgccacatggtggacacgtcgcagctgaagatgccgccggagaaa
gagagccgcgaggtcaacacgtggcggtgcacggagctgatgcagctgttgctgcacctg
gccgagagtgggcactcgtgcgccgtccaggagctgctcaacttcccgctgcagagctgt
cccgacatcctgtcgctgaacctgctggccaccggcagcacgtctcacctcgcccaggag
ctgctctccacgctgttccccatcttcctcaccggccaccaccccaacagcggggcggtg
ctgcaccaggcctggcattctccgcagaacggccccgccgtgcaggccatgctcgcgcac
accatggcagagtggtaccgccagggcgagggcgaccaggcgcgcctctcgcgcgtcctc
gacgtggcccaggacctcaaggccctgtcgtacctgctgaaccaccaggcgctgccgttc
gtcatcgatctggcttgcctcgcctcccgccgcgagtacctcaagctggacaagtgggtg
tcggacaaggccatggagcacggcgagccgttcatcaccgcctgcgtcaagttcctgcag
cgtcgcgtgccgcagctgtcagccggcgccgccaaggactccgatccgccggcgaaggcg
acgctgccggccgacatggcggtgacgatgctgagcgtgctgcaccagcgggcggcgggc
gtgggtccggagctcagcgacgcgctgctggccatggtgggcgccgccggacagctgctg
ctgggacggcagcgccagccgccgccgccgccgtcgcctttcagcccctcgccgctctcc
gcacagctgttcccggcgccgggcctggagggcgtgaccggcggcctgagcgcgctctcg
gcggctggctcggcccccagtcccggcctcggcctcacctcgcccttcacgctgctcggc
tacatctcggacgccggcgccgcgggccgcagcgggccgctgcagctgctcagcgccggc
tccgggccgctggccgcctcccaggcgccggggccgttcggctcggcccacgccctgccg
gcccgcacctcacagtccgcggagctgagcctcttccagtcggaggcggccgcgctctcc
aaggaggtggaggaggaggccaacagcaacttccagcgcatctacaaccacccgccgcac
ccgacgctctccatcgaggaggtgctcgacatgctcaagcggtaccaggacagcagcgtc
cagcgcgagcgggaggtgttcacgtgcatgctgcgcagcctgatggatgagtacaagttt
ttcccgcaatacccggacaaggagctgtacgtgacggcccagctgttcggcggcatcata
gagcacagcctagtcacgaactacaacggccttgggctggcactgcgctacgtgctggac
gccgtcaagaaccagccgggctccaagatgtactacttcggcgtgctggcgctggaccgg
ttccggccccgcctgcgcgagtacccgcagtactgccagcatctggccaccatccagcac
ttcagccagttccccagacacttgatggagtacgtggagtgcgggatgcgctcccaggag
ccggccggtcggcccgagggctctgtgttgccggctcacctgcagtcgctgctggcgacg
ccggcggcgccggccggcagcgccgcctcctcggccggcgcccggcccacggtgctcact
gccgcgctcgtctccggccggccgtccatagccaacacgacgaatatcgagacgctggtg
aaggcgctgcaggaggcgccgccgccctccgaggtcgtgcaggacaaggtcggcttcatc
tttaacaacctcagccagctcaacctcagccagaagtgtgaggacctgctggccgtgatg
gagcgggactactggccctggttcgcgcagtacgtggtgatgcgccgcgtcagcatcgag
cccaacttccacacgctctacgccaacttcatggacgcgctggagctgccgcagctgttg
cagctctgcttgcgcgagctgtacaacaatatccaggttctgctgcgagcagacaagggc
gtggagaagttcaacgaccggacgatcttgaagaacctgggccactggctgggcttgatg
accatcgccaagaacaagccgatccttcagacggacttggacatgaagtcgctggtcatc
gaggcctaccacctgggtgtccaggagcttctgtacgtggtgccgttcgttgccaaggtt
ctcgagtcgtccgcgaagtccaagatcttcaagccgccgaatccttggacactgggtctg
atgaacctgctggcggagctgcaccaagagcaggacctcaagctcaacctcaagttcgag
attgaggtgctctgcaagacactttcgctggacgtgaacgagctgacgcccagccagtgc
ctcaacgacccgctgcgacagcagcggctgcccgtgcagctgaagcggcccagcctgacg
gcgccgccagccctgccgccgccgccgcctccgccaccgccgccgcctcctccgccacct
ccgccgccgcctccgccgccgccggccacgtccgcgccgctggcgccgccggccggcgag
gccgaggaggcggcggcggcggcggtgaccgaggtggtgctgccggcgacggcgccccgc
ttctcgttcggggacatcaacaccagcagcatcgcaggcctcgctccacacatcaccatc
aacgtcacgctgccgctgttccagtcgaatccgcagctgaagcagatcgtgaggccggcc
gtggagcgcaccgtccaagactggctgccgcgcgccgtcgaacgtaactgcaagctggcg
gtgaacacggtggagcaggtggtgaagaaggacttggcgctggacccggacgagctgaag
atgcgcgcggccgctcaccagatggtgctcagtctgacggccggactgaccctcatcaac
tgccgcgaccacctcgccgtctccatagccaccaacgtcaaggccgccctgctcggcacg
gtccggacggccaccacgccgcagcagcaggagttcatggagcagacggccggccgggtg
gcggccgacaacgtggagctggcctgctgcttcatccagaagacggccgtcgagaaggcc
atcctggaggtggacaagcggctcatggcggagtacgacctgcgcaagagggcgcgcgag
gaaggacgccgctacgtcgacccacatatggccgtttaccacgagtcgcacatgcccgag
ccgctgcgcctggcggcgctcaccgcccgccaggcggccgtgttcgaggagttcgcgcgc
tccgtgcccggcttcgccgccacgccggaggtggcgccgcccgcctccagcggtgtggca
ctgggtccaccaccgctgcgcgcctctcagccgccgccgccgccgccgctgccgctgccg
tccgccgccagcgacgagctaccggccctgctggagaagctgtcgctggagctgcaggcg
gccgtgcacagcctgcacccggcggcggcggccgcgccccaggcgcaggcgctcgcccgc
cttgccaaggacgtttcgctgagcgcggcggcacgtgaccccaacgcccacgtccacctc
gtcaagatggcggtggacggcctgctggagtacatgtcgcagctgccggctgacccggac
ctggccgtgcgctgtcgcgacggccacctgatggtgctgcgagcgctgcaggatccgcgc
gcgcacggaccgcattgggttcagaagcacgtcactagcctggtgatagagtgtcgggag
gaccagcggctgaacctggaggcggtggacgcgctcatccgcgcccggctcgtctccacg
cagcagctcgatgcccacctggcgcacgccatggaggccggcaattacagcctgatgggc
ctcagtcttcagctgcttcaggcgttcctggtggacgaccgcagcaacgcagtcacggag
aacgacttcatgaacacgctggacgcgctggcgaagctggcccagcagcccggctgtccg
gagaacatcccgctgttgctggagcaggtgcgggccggcggcgcgggccgcgagccgccg
ttcccggccgaccgcagcccgagcggccccaccgcccacatccacaagggcatctcgcag
gcgcgcgagttcgacgacccgcccgacatgcagcagaagaccgagtacctgctgagggag
tgggtgcagctgtaccacatgcccagctccggccgcgactccaccaaggcgttcaccatc
atcgtgcaccagatgaacgtgcagggcatcttgaagactgacgacctgatcacgcgcttc
ttccggctgtcgacccagatgtgtgtggacctgagctaccgtgcgctgacggactctgcg
gtgggctcgccggccatggtgcgctccaagtgcttccgcacgctggacgcgttcgtgcgc
ctgatcgcgctgctggtcaagcacagcggcgagtcgccgcacgccgtctcaaagatcaac
ctgctcaacaaggtgctgggcatcgtgacgggcgtgctgctgcaggaccacgaggtgcgc
aaaacggaattccagcagctgccctaccaccgcatcttcatcatgctgctgcttgagttg
aacgcgccagagacagtcctggaggctatcaacttccaggtgctgacggccttctgtaac
gtgctgcatatcctgcggccggagaaggcgcccggctttgcgtacgcctggctcgacatc
gtctctcaccgcgtgttcatcggccgcatgctggcagtcacgccccagcacaagggctgg
ggcccgtacgcgcagctgctgatcgacctcttcaacttcctgtcgccgttcctgcgcaac
gctgagctggccaagcccgtcaccatcctgtacaagggctgcctgcgcgtgctgctggtg
ctgctgcacgacttcccagaattcctgtgcgactaccactacaacttctgcgacgtcatc
ccgccaaactgcatccagatgcgcaacctggtgctgtcggccttcccacggaacatgccg
ccgccggacccgttcaccagcaagctgcaggtggacatgatccccgagatccgcgaggcg
cccatgatccagaccaacttcgcctcgctcatccagccgcccagcttcaaaaatgagctg
gacacgtacctgaaggcgcgcacgccgggtgacgtcgtcacggacctgcgctcgacgctg
cagactggcgcccagcccggcagccggtacaacgtgcagctgatcaacgcgctggtgctg
tacgtgggcacgcaggcgatcgccgccatccagagcaaggggctgcagccgagcaagcaa
acaatcgcgcacagctcgcacatggatatcttccagaatctcgccgaggacgtgaacgtc
gatggccggtacctgttcttgaacgccattgccaaccaactgcggtacccgaacagtcac
accaactacttcctcaacctgctgctgtatttgttcgcggaggcgaacacggcggccatc
caggaacagatcaccagggttctgctcgagcggctgatcgtcaaccggccgcacccgtgg
ggcctgctcatcaccttcatcgaactcatcaagaacccagcgttcaagttctggaagcac
gagttcgtgcactgcgcgcccgagatcgaaaagctgtttgacagcgtggctcgctcgtgc
gtagcgctgggtcagaaggggtcgcacactgcagagctgtga
DBGET
integrated database retrieval system
