Pollicipes pollicipes (gooseneck barnacle): 119105840
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Entry
119105840 CDS
T08250
Name
(RefSeq) TAR DNA-binding protein 43-like
KO
K23600
TAR DNA-binding protein 43
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119105840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119105840
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
119105840
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
119105840
NCBI-ProteinID:
XP_037085288
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MSCYIQVAEEENEEPMEIPCEEDMGLLLTTLSAQFPGACGLKYRTESRSLRGVRLVDGKF
QPPDGGWGSVVYLCVFPKETPEENKRKNDELLESGLAKTKRLELKQKCSDLIVLGLPWKT
TEQELREYFEPFGEVLMAQVKKDPKSGQSKGFGFIRFGTFESQMRVLSQRHMIDGRWCDV
KIPNSRSMEGQQHQVPCKVFVGRCSDDMTPDDLRDYFGQFGEVTDVFIPKPFRAFAFVTF
LNPDIAQSLCGEDHIIKNTSVHVSNAAPKSDHAGRHGFGRGHPRDVGRGPGMGGYGPPQH
SYGGQGMNGGWGGQHQGSRGNEMPNLAALGTSLGLGGSMGQGAHQGMGGGQGGSMNPAQM
GVGALNLGLNPLAVAAALNQAGWGLLSNLPGQSPDTPMAYSQAGPAPASQAQGPPSMAPS
SQAGGGPAGGGFLSWMNQGGGGDGGGMAQPPGSQPPAGGAGWPQRSDPKQAGGYNRNPTY
DV
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagttgctacattcaagtagctgaggaggaaaatgaagagcctatggagataccgtgt
gaggaagatatgggactcctgctgacgacactgtcggcgcagttcccgggtgcctgtggt
ctgaaatatcgcacagagtcaagaagtttgcgtggtgtgcggctggtagatggaaaattt
caacctccggatggtggatggggcagtgtggtatacctgtgtgtatttcccaaagaaact
cctgaagaaaacaagcgcaagaatgatgagctgctggagtcggggctggccaagaccaag
cggctggagctcaagcagaagtgctccgacctgatcgtgctcggcctgccctggaagacc
accgagcaggagctgcgcgagtacttcgagccgttcggcgaggtcctcatggctcaggtg
aagaaggacccgaagtcgggccaaagcaaggggttcggcttcatccgcttcggcacgttc
gagtcgcagatgcgcgtgctcagccagcgccacatgatcgacggcaggtggtgtgacgtg
aagatccccaactcccgctccatggagggccagcagcaccaggtgccgtgcaaggtgttc
gtgggccgctgctcggacgacatgaccccggacgacctgcgcgactacttcggccagttc
ggagaggtcaccgatgtcttcatccccaagccgttccgcgcgttcgccttcgtcacgttc
ctcaacccggacatcgcgcagagcctgtgtggcgaggaccacatcatcaagaacacgtcg
gtgcacgtgagcaacgcggcgcccaagtccgaccacgcgggccggcacgggttcgggcgc
ggccacccgcgcgacgtcggccgcggccccggcatgggcggctacggcccgccgcagcac
agctacggcggccagggcatgaacggcggctggggcggccagcaccagggcagccgcggc
aacgagatgcccaacctggccgcgctgggcacctcgctcggcctcggcggaagcatgggc
cagggcgcccaccagggcatgggcggcggccagggcggcagcatgaacccggcgcagatg
ggcgtcggtgcgctgaacctgggcctgaacccgctggcggtggcggcggcgctgaaccag
gccggctggggactgctgagcaacctgcccggccagagcccggacacgccgatggcgtac
agccaggcgggcccggcgccggctagccaggcgcagggcccgccctcgatggcgcccagc
agccaggccggcggcggcccggccggcggcggcttcctcagctggatgaaccagggcggc
ggcggcgacggcggcggcatggcgcagccgccgggctcgcagccgccggccggcggcgcc
ggctggcctcagcgctccgaccccaagcaggcgggcggctacaaccgcaaccccacctac
gacgtctaa
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