Paenibacillus polymyxa CR1: X809_29260
Help
Entry
X809_29260 CDS
T02956
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X809_29260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppol03400
]
X809_29260
DNA repair and recombination proteins [BR:
ppol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X809_29260
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
X809_29260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
nSTAND1
RsgA_GTPase
AAA_29
nSTAND3
AAA_21
ATPase
AAA_22
DnaJ_CXXCXGXG
SLFN-g3_helicase
Viral_helicase1
cobW
MMR_HSR1
ScfRs
YjdM_Zn_Ribbon
Dynamin_N
Motif
Other DBs
NCBI-ProteinID:
AIW40154
LinkDB
All DBs
Position
complement(3075812..3078649)
Genome browser
AA seq
945 aa
AA seq
DB search
MQNFINVHGARENNLKNIDIQIPRDQIVVITGVSGSGKSSLAFDTLYAEGQMRYVESLSS
YARQFLGQINKPDVDSIEGLSPAIAIEQKTTSNNPRSTVGTVTEIYDFLRLLWARVGTPH
CPSCKSEVTRQSVDQIVDQIYRLPQGTKYMVLAPLVQDKKGEHQHIFEQARTNGYARVRV
DGIVKNLSEEIQLDKNRKHTIAIVVDRLVVKEGETQRLTASIETAITLSGDTVLVHRMDS
GEDMLFSQSFACARCGFSMQELSPRMFSFNNQYGACPTCSGLGFHLEVDPIKVAPDRSQS
LNSGAIKATGWGNVETNSYCKMYFEAIGKKAGFDLDTPLDQISQQALDMLLYGTQGEKLE
LRWESNHRERLLHQAFEGIVNNLDRRYRETQSDTMRKELESYMSALPCHDCHGDRLAPML
LAVTVCDMNISDFCKLSVTEAIHFIENMHLSPAKAMIAAPITTEIVDRLVFLKNVGLEYL
TLYRTAGTLSGGESQRIRLATQIGSRLTGVLYIRDEPSIGLHQRDNERLISALKEMRDLG
NTVIVVEHDEETIRQADWIVDIGPGAGKHGGEVVAQGELDQIAAEKRSITGQYLSHQRWI
PVPENRRPGNGHHLTIVGAAENNLKDINVSIPLGTITCVTGVSGSGKSSLVNEILYKKLA
ATLNRAHTRSGKHLQIDGIEHLDKIINMDQSPIGRTPRSNPATYTGLFDNIRSLFAMTNE
AKVRAYGPGRFSFNIKGGRCEACTGDGLMRIEMHFLPDVYVPCDVCKGKRYNRETLEVHY
KGKSIADILEMTADEAVVFFEYVPKIRKKIEALCKVGLGYVKLGQSSTTLSGGEAQRVKL
ASELLKPATGSTLYVMDEPTTGLHVADVQQLINILHVLTEEGNTIVVIEHNLDVIKNADY
IIDLGPEGGSDGGNVVCTGTPEQVADFKLSYTGQYLRKELRDIHS
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattttattaacgttcatggagcacgggaaaataatctaaaaaatattgatatt
caaattcctcgtgaccaaatcgttgtgatcaccggggtgagcggctcgggaaaatccagc
ctggcattcgatacgctatatgctgagggacaaatgcgttatgttgaatcactatcttcc
tatgcaagacaatttctcgggcagatcaataaaccagatgtcgactcgatcgaaggactt
tcacccgcaattgccattgaacaaaaaacgacatctaacaatccacgttccacagtgggc
actgtaactgagatttacgattttttgaggttgttgtgggcaagggttggaacgccgcat
tgtccatcctgtaaaagtgaagttacgcgccagtctgtcgatcaaattgtagatcaaata
tataggcttcctcaaggaacgaaatatatggtgctcgcacctttagtacaagataaaaaa
ggggagcaccagcacatttttgaacaagcgagaaccaatggctatgcacgtgtgcgagta
gacggtatcgttaagaacctatcggaagagatccaacttgataaaaacaggaaacatact
atcgctattgtagtggaccgtctggtagtcaaagagggggaaactcagagactgacagcc
tctattgaaacagccattactttgtccggcgatactgtattggttcaccggatggatagc
ggtgaggacatgctgttctcccaaagttttgcttgtgcccgttgcggattttccatgcag
gagctgtctcctcgcatgttctcttttaataatcagtacggcgcctgtccgacttgctcg
ggacttgggtttcatcttgaggttgacccgatcaaagtcgcacctgatcgcagtcaatcg
ttgaactcgggcgcaattaaagctaccggatggggaaatgtcgaaaccaactcctattgc
aaaatgtattttgaagcgattggaaaaaaggctggatttgatctggatactcctcttgat
cagatttcacagcaagcattggacatgctcctgtatggaacacagggtgaaaaacttgaa
cttagatgggaaagcaatcatcgggagaggctgctgcaccaggcattcgaagggattgtc
aacaatctggatcgacgctaccgggaaacccagtccgatacaatgcggaaagaacttgaa
agctatatgtccgccttgccttgccacgactgtcacggtgatcggctggccccgatgctt
cttgctgtaaccgtctgtgatatgaacatctcagatttctgcaagctgtctgttaccgag
gccattcattttatcgaaaatatgcatctgtccccggctaaggctatgattgccgccccg
attacgacggagattgttgaccgacttgtatttttgaaaaatgtcgggctggaatatttg
acgttataccgaactgccggaacactttcaggcggggagagtcagcgcattcgtttggcc
acccagataggatcgcgcttaacaggagtgctgtacattcgcgacgagccctcgatcggt
ttgcaccagcgagacaatgaacggcttatttccgctttgaaggaaatgcgtgatttgggc
aacaccgtcattgtggtggagcatgacgaagagacgatccgccaagcagactggattgtg
gacattggtccgggtgcgggtaaacatgggggagaagtggttgctcagggagaacttgac
caaattgccgctgaaaaacgttcgataacaggccaatatttgtcgcatcaaagatggatt
cccgtgcctgagaaccgtcgaccaggcaatggacatcatctgactattgtgggagcagcg
gaaaacaatctgaaagacatcaatgtatccatcccattaggaacgatcacgtgtgttacg
ggcgtttccgggtcaggtaagtccagccttgttaacgagatactttataaaaagctggcg
gcgacgctaaatcgagctcatactcgctcaggaaaacatttacaaattgatggcatagag
catttggataagattattaatatggatcaaagcccgatcggacggactcctcgttccaac
ccggccacatacaccggtctttttgataatattcgctccctatttgccatgacaaacgaa
gccaaggtgcgtgcttatggcccgggtcgcttttcgtttaatattaagggcggacgctgt
gaagcctgtacgggtgatggattgatgagaatcgaaatgcatttcctgcccgatgtgtat
gtgccttgtgacgtctgtaaagggaagcgatacaatcgcgaaactctggaagttcactat
aaagggaaaagcattgcagatatcttggagatgactgcggacgaagctgttgtatttttt
gagtatgttccaaaaatacggaagaaaatcgaggcgctctgtaaagtggggttgggttat
gtgaagctgggtcagtcttctacaacgctatcaggcggagaagcgcaacgagtgaaactt
gcatcagaactgctgaagcccgctacgggttcaacgctatatgttatggatgaacccact
acaggacttcacgttgcggatgtgcagcaattgatcaatatacttcatgtgctgaccgag
gaggggaataccattgttgttatcgagcataatctggatgtgatcaagaatgcagactat
attatagatctgggacccgaaggtggtagcgatggagggaacgtcgtatgtaccgggacc
ccagaacaagtggccgactttaagctgagctacacggggcaatatttacgaaaagaactt
agagacatacattcatag
DBGET
integrated database retrieval system
