Pseudodesulfovibrio portus: JCM14722_28300
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Entry
JCM14722_28300 CDS
T08636
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCM14722_28300 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppor03021
]
JCM14722_28300 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_28300 (rpoB)
Enzymes [BR:
ppor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCM14722_28300 (rpoB)
Transcription machinery [BR:
ppor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCM14722_28300 (rpoB)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCM14722_28300 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Hydin_ADK
Motif
Other DBs
NCBI-ProteinID:
BDQ35288
UniProt:
A0ABM8AUU6
LinkDB
All DBs
Position
3014366..3018496
Genome browser
AA seq
1376 aa
AA seq
DB search
MGQLRKKFGKIVNTLPIPHLLELQVDSYNRFLQAETPPASRGDFGLEGVFRSVFPIEDFN
KTASLDFVSYEIGEPKYDVDECISKGLTYETPIRITVRLVVFDVDEETDNRTIRDIKEQD
IYFGTLPLMTEKGTYVINGTERVIVNQLQRSPGIIFEHDSGKSHSSRKVLYSSRIIPMRG
SWLDFDFDHKDILYVRIDRRRKMPVTILLKAMGLSRADILDYFYDIESYTLLKTKVQRTV
VAEQYRKEIAFTDIKVDGKVVIAKGKDITKGAWRKLVRAEVKNIEVDPDSLVGQYLARDM
VDKNGEVLAEAAEELTPELIERLREAKIKDLDVLHTRGMEVSSSLRDTLLLDKTTDMETA
QIEIYRRLRPSSPPTPEIASNFFENLFRSSDYYDLSSVGRYKLNSRLNQDVDLSIRTLTN
EDILLAVRELMRLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQ
EVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRER
AGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDYGFIETPYRKVVDKKITNE
INYMDASKEAKEVVAQANAPLDDKGVFVNPRVNARLAGDVQLTAAEDVTCMDISPSQTVS
ISAALIPFLEHDDANRALMGSNMMRQAVPLLQAEEPLVGTGMEGPVARDSGACVLAEEDG
VVHYVDAERVIINYDKGLYSKSGGAKHYELQKWHKSNQNSCFGQTPRVQVGQRVLKGEVL
ADGPGIDHGELALGKNLLVAFMPWCGFNYEDSILISERMVKEDVFTSIHIEEFELVARDT
KLGPEEVTRDISNVSEEMLRNLDECGIIRIGARIKPDDIMVGKITPKGETQLTPEEKLLR
AIFGDKARDVKNTSLKVPPGIAGTVVDVKVFNRRSGEKDDRTKAIEDAELAAFDVKELKH
IASLTDAVRERIWDSLEGTKLKKDLVGSKKTTLAKSGEVISREALDGVPVKKLIGLFDKD
ANDQLKLIVADYESQVAFIKNIYDVKREKVTEGDDLPPGVIKMVKVYVAVKRKLSVGDKM
AGRHGNKGVVSCILPEEDMPFFDDGTPMDIVLNPLGVPSRMNIGQIMETHLGMAGRKLGQ
QVTAMLEESGNSLKGIREEVKSILATPDMDELIDTLDDEQFVDALKKLKNGIVAKTPVFD
GAEEDGIWGWLEKAGLASDGKFILYDGRTGEPFHSRVTVGIMYILKLHHLVDEKIHARST
GPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVQGRVKMYEKI
VKGDNFLEAGLPESFNVLVKELMSLGLDVTLHYEDRKRPGAPSAPTMPSAMQPLVD
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaactgagaaaaaaattcggcaaaatcgtcaacacgctccccatcccgcacctg
ctggaactccaggtggattcgtacaatcgtttcctccaggcggagaccccgccggccagc
cgtggtgatttcgggcttgagggcgtgttcaggtccgtttttcccattgaagatttcaac
aagaccgctagccttgatttcgtctcctatgaaatcggcgaaccaaaatacgacgtcgat
gagtgcatctcgaagggcctgacctacgagacacccatacgtatcaccgtccgtctcgta
gtttttgacgtggacgaagagactgacaaccgcacgattcgagacatcaaggaacaggac
atctacttcggcacgctcccgctcatgaccgagaagggaacctacgtgatcaatggcacc
gagcgtgtcatcgtgaaccagttgcagcgttcccccggcatcatcttcgagcatgattcc
ggcaagtcccactccagccgcaaagtcctgtactcgagccgcatcattcccatgcgcggc
tcctggctcgatttcgatttcgatcacaaggacatcctgtacgtgcgcatcgaccgccgc
cgcaagatgcccgtcaccatactgctcaaggccatggggctgtcccgggccgacatcctc
gattacttctacgacatcgagtcctacaccctgctcaagaccaaggtgcagcgcaccgtg
gtcgccgaacagtaccgcaaggaaatcgccttcaccgacatcaaggtcgacggcaaggtc
gttatcgccaagggcaaggacatcaccaagggcgcctggcgcaagctggtgcgtgccgag
gtcaagaatatcgaggtcgatcccgattccctggtgggccagtacctggccagggacatg
gtggacaagaacggcgaagtgctcgccgaggcggccgaagagcttactcccgagctcatc
gagaggctccgcgaggccaagatcaaggacctggacgtgctgcacacccgcggcatggag
gtttcctcttccctgcgcgacacgctcttgctcgacaagaccaccgacatggagaccgcg
cagatcgagatttaccgtcgtctgcgccccagctctccgcccacgcccgagattgcgtcc
aacttcttcgagaacctgttccgctcatccgactactacgacctgtccagcgtgggccgt
tacaagctcaattcccgtctgaaccaggatgtggacctgtcgatccgtaccctgaccaac
gaggacatcctcctggcggtcagggaactgatgcggctcaaggattcccacggcccggcc
gacgacatcgaccatctgggcaaccgccgcgtccgccccgtgggcgaactggtggagaac
cagtaccgcatcggtctcgtccgcatggagcgcgccatcaaggagcgcatgtccctgcag
gaagtggccaccctgatgccccatgacctgatcaaccccaagccggttgccgcagtgctc
aaggagttcttcggaacttcccagctcagccagttcatggatcagaccaacccgctttcc
gaggtcacccacaagcgccgtctctccgcgctgggacccggcggcctgacccgcgaacgc
gcgggcttcgaagtgcgcgacgtgcatacttcgcactacggccgcatctgccccattgag
actccggaaggcccgaacatcggcctgatcgtgtccctgaccacctacgccaaggtcaat
gactacggtttcatcgagacgccgtaccgtaaggtcgtggacaaaaagatcaccaatgag
atcaattacatggatgcgtccaaggaagccaaggaagtggtggcccaggccaacgctccc
ctggacgacaagggcgtgttcgtcaatccgcgcgtcaacgcgcgcttggcgggcgacgtt
cagctgaccgcagccgaagacgtcacctgcatggacatcagccccagccagacggtttcc
atctcggccgcgctgattccgttcctggagcacgatgacgccaaccgcgcgctcatgggt
tccaacatgatgcgtcaggccgtgccccttctccaggccgaggagccgcttgtcggcacc
ggcatggaaggcccggtcgctcgcgactccggcgcctgcgtgctggccgaggaagatggc
gtcgtccactatgtggatgccgagcgcgtcatcatcaactacgataaggggttgtactcc
aagtccggcggcgccaagcactacgagctgcagaagtggcacaagtccaaccagaactcc
tgcttcggccagacgccccgcgtccaggtcgggcagcgcgtcctcaagggcgaagtcctg
gccgacggccccggcatcgaccacggcgagcttgccctgggcaagaacctgctcgtggcc
ttcatgccctggtgcggtttcaactacgaggactccatcctcatctccgagcgcatggtc
aaggaagacgtgttcacctccatccacatcgaggagttcgaactggtcgcccgcgacacc
aagctcggacccgaagaggtgacccgcgacatctccaacgtctcggaagagatgctccgc
aacctcgacgaatgcggcatcatccgcatcggtgcgcgcatcaagcccgacgacatcatg
gtcggtaagatcacgcccaagggcgagacccagctgaccccggaagagaagctcctgcgg
gccatcttcggcgacaaggcgcgcgacgtgaagaacacgtccctcaaggtgccgccggga
atcgcgggcacggtcgtggacgtcaaggtcttcaaccgccgctccggcgaaaaggacgac
cgcaccaaggctatcgaggatgccgaactggccgccttcgacgtcaaggaactgaagcac
atcgcttccctgacggacgccgtgcgcgaaaggatctgggattccctcgaagggaccaag
ctcaagaaggaccttgtcggctccaagaagaccacgctggccaagtccggcgaagtcatc
agccgcgaagccctggacggcgtccccgtcaagaagctgatcggcctcttcgacaaggac
gccaatgaccagctcaagctgatcgtggccgactacgagtcgcaggtcgccttcatcaag
aatatatatgacgtcaagcgcgagaaggttaccgaaggcgatgatctgcctccgggcgtc
atcaagatggtcaaggtctacgtcgccgtgaagcgcaagctctccgtgggtgacaaaatg
gccggtcgtcacggcaacaagggcgtcgtttcctgcatccttcccgaggaagacatgccg
ttcttcgacgacggcacccccatggacatcgtcctcaacccgctgggcgttccctcccgt
atgaatatcgggcagatcatggaaacccacctgggcatggcagggcgcaagctcggccag
caggtcaccgccatgctggaagagtccggcaattccctcaagggaatccgcgaggaagtg
aaatccatcctggcgaccccggacatggacgagttgatcgacaccctggacgacgagcag
ttcgtcgatgccctcaagaagctcaagaacggcatcgtcgccaagaccccggtcttcgac
ggcgccgaggaagacggcatctggggctggctggaaaaggccggtctcgcctccgacggc
aagttcatcctgtatgacggccgcacgggcgagcccttccacagccgcgtcaccgtgggc
atcatgtacatcctcaagctgcaccacctggtcgacgagaagatccacgcccggtccacg
ggcccgtactccctcgtcacgcagcagcctctgggcggtaaggcccagttcggcggacag
cgactgggtgaaatggaagtctgggcgctggaagcatacggcgccgcgtacctcctgcag
gagttcctgaccgtcaagtccgacgatgtgcagggccgcgtgaagatgtacgagaagatc
gtcaagggcgacaacttcctggaagccggcttgccggaatccttcaacgtcctggtcaag
gaactcatgtcgctgggtctggatgtgaccctgcactacgaggaccgcaagcggcccggc
gcaccttccgcgccgaccatgccttcggcaatgcagccgctggtggactag
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integrated database retrieval system
