Physcomitrium patens (spreading earthmoss): 112274499
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Entry
112274499 CDS
T01041
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112274499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112274499
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112274499
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112274499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
I-TevI_DNA-bd
Motif
Other DBs
NCBI-GeneID:
112274499
NCBI-ProteinID:
XP_024359835
UniProt:
A0A2K1ISJ3
LinkDB
All DBs
Position
21:12154606..12174296
Genome browser
AA seq
2489 aa
AA seq
DB search
MLSFATLLPSQIGFSIASLNKNNYKSIELEFHQFIEYGIDGSLILRNCLEHVNLHGGEVH
NLSLKLDLLASILKMLIHQPNSGSTLCEAMGHSCLTEGFLENLCCALKFPIPEQIGLGLA
LTDAEDIILQQEGQSFCKAKISEICENPTSGLTEPLIEEIIFFLHRSEGLAKHFHSFMRA
LQSLQPNIQESLLSTALLQANVNEVNCMRSFSRVGSTGADTALEMCSLLSTATSVADVME
ELGYSCTVDIDHCRGVLGLFPTLTEIEVARILGMVARTHRRSEDLQGTHSTFCTALCNDE
QVSSDWLTTWDVDVLVDSIKQLAPGLSWEVVIEKLDHEGFLLPDQKAFSLLLRMYGKACQ
DPFPLEAVCGHVWQNGEGQLSFLKHAVSAPPELFTFAHSLRKQVHRQSAATPNYAWLSLD
LLEILCGLAELGHLSSVRSLLEIPLQQCSELLIFGLAQVKTEWNIIQAEMLPLLLPSYLA
TNATSSVVQELWLLNADLVMRTMVEIHAADPSSIPRILDVCHELKVLDRVLECTPFPFSI
ELAAIASRRDFLNLEKWLQDNLTIHRDSFFQACVKFLKERTLLEAQMDRQICAGGMASQR
QGPVVSLALDTTQTFFKVLHTNTSQLYSGELVEDFELVKEAATRANPRLMSVATSDQPQI
EAGSEYVDEEANSYFQRIYIGQITIDDVVDMLKRFNLPSSTSREKAISACMVQSLFEEYQ
FFPRYPERELRITAVLFGSLVKHQLVSSVILGQALRCVLDALRKPLDSKMLSFGTVALGE
FKERLAEWPQYCNHVLQIPQFRQSQPELVKFIQRALMRGEANQHEIAGNGMFHTDQQFSG
AAQCDTKSSLILLEGLEQFPAPLISMEERKCVNPLLRTTDDEVLDRGLNVALDGSLVLSI
PSPAVQTGQVKLQNTESGSLVSQHFRLSSSLLDERVKIAYSSSSESGISMQQTLGNRTSE
LGTGQKLASQGSTYSALSNGQSPQHLRSKAGAGTGVLRQPSASTGFGHALNIGTLVAAAE
TRNSPIETPSSEVQDKIAFIMNNISITNLDQKAKECLEVLKDSYHPWFAQYVVMKRASIE
PNFHDLYIKFLDKLNSKGLQKEVLKASYENCKVLLRSELIKVSSEERSLLKNLGSWLGKL
TIGKNQPLRAREVDPKSLIIEAYEKGLMIAIIPFTSKVLEPCQASLVYQPPNPWTMAILG
LLCEIYVMPNLKMNLKFDIEVLFKTLNVDMKDVKPAQLLVGRERDLENNPDFSNKDSTNY
QSLAPAGAVRVPAAAPLQPSELPTDQAASIPCLPLTTKTSQLIDEENMNLSVVEIPQSAQ
GQSQITQTQSAISAGQVGMSIPNLSAYVVLNPKLIGLVQTLQLQRIVPLAMDRAIRETIT
PVVERSVTIACMTTRELVLKDFAMEADENHTRSSAGLMVASLAGSLAHVTCKEPLRAAMA
NHLRSLLQVVNLSGDVLEQAVNLVTNDNLDLGCAVIEKSATEKAQRDLAGAIGPALTVRR
NKRDGSNAAYYDAAFYSGPILSPLPEILRPKRGKLSSAQQRVYEDFARLPWQNQPSQSVP
TLAGHPLGSSVPTYAPNASGQANGSTHNHGHCQAAIVNGGLHQASESGADDLELRGQIPL
SFPSPGSVSKADRSTLQNRETNLVSPQFSVNTASSLDINGGNDPAVFKGSTHTANFSPQP
PLPTEQLGPTVIENSLTTGEVMEKYHLVAQKLETALSKMTTMSYGALPPEHEVWVIVNEL
QEIITQGISRDEAALVIAQKIFQRLYEHSTSHLHVLVHLTILEAIRDVCKRVGKELTSWV
IYSDEERRYNREITVGLIRSELINLSDYNVQLTKLMDGGRNKDAVDFAAYLVKTCVIEDS
GVSNTEFYNVIDALGKLAARPDSPVSLQQLVDVARTTSSSGRPGGTGFNKEDKIRLAKDR
KVPSGRTSGLREDGNVGTRDIAAGDPAGLRDQVASLFDEWASICDAPGTSDKAYAVYVSH
LQHSGMLKGDDISDRFFRILIELAVAHCLNSETVLPNSGLFDSSQQESNLSFAAIDMFAK
LVLLLVKYYVDPSMSKVNLLNKVMVVTVRVIQRDFHERRANFQPRPYFRLFVTWLQDLNA
ADPILDSSNFQVLTIFGTALLALQPLQVPGWSFAWLELISHRMFMPNLLLSNSPKGWPLF
QRLLVALFKFMEPYLRNADVSDPIRLLYKGTLRVLLVLLHDFPEFLCDNHFTFCDVIPPS
CIQMRNLILSAFPRNMRLPDPFTPNLKVDLLPEISQAPHILYDVEPALKSKQLKAEVDEY
LKTRNSQSFQSLDIKGQLILPASEVVPYGTKYNVPLLNALVLYIGMQAIQQMQTKITPQQ
LAIPTAPITQSAPMDIFQRLIIDLDTEGRYLFLNAVANQLRYPNNHTHYFSCVLLYLFAE
ANMEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSHSFTRCAPEIEKLFE
SVARSCMGPSLKPSDDDLAATLGAEGLKN
NT seq
7470 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcgtttgctactctacttcctagtcagatcggtttctcgattgccagccttaac
aagaacaattacaagtctattgagttggaattccaccagttcatcgaatatgggatagat
ggaagcttgatactgaggaattgcttggagcacgttaaccttcatggaggagaagttcac
aatctttctctaaaattagacctgctggctagtatactaaagatgctcattcaccagccg
aattcgggatcaacactttgtgaggcgatggggcactcatgcttgaccgaaggatttctt
gaaaacctatgctgtgcactgaaattccccattcccgagcagattggacttggccttgca
ttaacagatgctgaagatattattcttcaacaagagggccagtctttctgtaaagcgaag
atctcagagatttgcgagaatccaacttctggtttaacagaaccgcttattgaagaaatc
attttcttcttgcaccgtagtgagggcttggcaaagcactttcattcgtttatgagggca
ttgcaatcccttcagccaaacattcaggagtctttgttgtcgactgccctacttcaagca
aatgtgaatgaagtcaattgtatgaggagttttagcagagttggatcgactggggcagac
acggccctagaaatgtgctccttattgtccactgcaacaagcgttgccgatgttatggaa
gagttgggttacagctgcactgtagatattgatcattgtagaggagttcttggcttgttt
cccactctcacagaaattgaggtcgcccgcattcttggaatggttgcccgaacccatcgt
aggtcagaagatctgcaaggcacccacagcacgttttgcacggcgctttgcaatgatgaa
caggtttcttcagactggttgaccacttgggacgtggacgtgcttgtggactccataaag
cagctggccccaggtcttagctgggaagtggtgattgagaaactggatcatgaaggtttt
ctattacccgatcaaaaagcgttttctctcttgttgagaatgtatgggaaagcttgtcag
gacccatttccactagaagcagtatgtggacatgtatggcaaaatggagaaggccaactt
tccttcttgaagcatgcagtttcagctcctcctgaattgttcacatttgctcatagttta
agaaagcaggtccaccgacaatctgctgcaacgccgaattatgcttggctgtctcttgac
ttgctagaaatcctgtgtggcctagcagagttgggacatcttagctctgtgcgtagtctg
cttgagatacctcttcagcaatgttcagaacttttgatttttggtttagcacaagttaag
acagagtggaacataattcaggctgaaatgcttcctttgctacttccatcttatttggcg
accaatgccaccagcagtgtagtacaggagttatggttgctcaacgcagacttggtaatg
agaacaatggtcgagatacatgctgctgatcctagtagcatcccaagaatattagatgtt
tgtcacgagctgaaggtcttggatagagtgcttgaatgcactccatttccattttccata
gagcttgcagctattgcttcaagaagagatttcttgaacctggagaagtggttgcaagat
aatctcactatccatcgtgattctttcttccaggcttgtgtgaagtttttgaaggagaga
acgcttttggaggcacaaatggatagacagatttgtgcaggtggaatggccagccaacga
caaggaccagttgttagtctagctttggacacgacacagacgtttttcaaggttcttcat
accaacacaagccagctttattctggtgagctagttgaggactttgagctcgtcaaagaa
gctgccacacgtgcaaatccgcgattaatgagtgtggctacttcagatcagccacagata
gaagcagggagtgaatacgttgatgaggaggcgaactcttactttcagaggatttatatt
ggacaaattaccatcgatgacgttgtggatatgctcaagcgattcaacttgccttcctct
acttcgagggagaaggcaatatcggcttgcatggtccaaagtttgtttgaagagtatcag
ttctttccaagatatcctgaacgagaattaagaattactgcagttctttttggttcactt
gtcaaacatcagctggtttcgtccgtcatcttgggtcaagcactgcggtgtgtcttggat
gccttgcgaaagcctttggactccaagatgctttcttttgggacagtcgctctgggggag
ttcaaagagcgtttggcagagtggccgcaatactgcaaccatgttcttcaaattccacag
tttcgtcagtctcaacctgaacttgtgaagttcattcagcgagccttaatgcgaggggaa
gcaaatcagcatgagattgctggcaatggcatgtttcatacggaccagcaatttagtggt
gcagcccaatgtgatacaaaatcctctctgatactgctggagggtttggaacaatttcca
gctcctcttatttccatggaggagagaaaatgtgtgaatcctctacttcgaacaacagat
gacgaggttctggatcggggattaaatgttgctctggacggatccttagtcctatctatt
ccttctccggcggtacaaaccggtcaggtcaaactgcagaatacagaatcaggatcactt
gtgtcgcagcacttcagactgtcatcgagcttgctcgacgaaagggtgaagattgcatat
tcgtcgagctctgagtctgggatcagcatgcagcaaacactggggaatcgaacctctgag
cttggtactggacagaagttggcctctcagggttcgacttattcagctttatcgaatggg
cagtcaccacaacatcttcgttctaaagctggcgctggaacaggagttttgcgccagcct
tctgcatcaactgggtttggtcatgctctaaatattggtactctggttgctgcggctgaa
actcgaaattcccccattgagacgccatcatctgaggttcaagataaaattgctttcatc
atgaacaatatttcaattaccaacctggatcagaaggccaaagagtgcctagaagttttg
aaggatagttatcatccttggtttgctcaatatgtggtgatgaaaagagcaagcatagaa
cccaatttccatgacctctacatcaagtttctggataaattgaactcaaagggattgcag
aaagaggttttgaaggcatcttacgagaactgcaaggtcttgctccgctcagagttgatc
aaagtgagttctgaggagcgttcacttctaaagaacttggggagttggttgggcaagttg
actattggcaaaaatcagcctttgcgagcacgggaagtggatccaaaatcacttattatt
gaggcatatgagaaaggactgatgattgcaattattcctttcacatccaaggttctagag
ccatgtcaggccagtctagtataccagccaccaaatccatggaccatggcaattttagga
ttgctttgtgagatttatgtgatgccaaacttgaagatgaatctgaaatttgatatcgag
gtgttgttcaagactctcaatgtggacatgaaggatgtgaaaccagcacaattattggta
ggtcgggaaagagatcttgaaaataatccggacttctcaaataaggattcgacgaactat
caatcccttgcacctgcaggagctgttcgtgtgccggctgcagctccccttcaaccctcg
gaattacctactgaccaagctgcttcaattccatgtttgccacttacaacaaaaacatct
cagttgattgatgaagagaacatgaatcttagcgtagttgagataccgcaaagtgcccaa
gggcagtcccaaattactcaaacgcaatcagctatctctgcaggccaggtggggatgtca
ataccaaatctatctgcttatgtggtgctcaatcccaagttaattggtttagtgcagacg
cttcagctccaaagaattgttcccctcgccatggaccgggccattcgtgagactattaca
ccggtagtagaacgcagtgtgactattgcttgcatgactaccagggagcttgttttaaag
gatttcgcaatggaagctgatgagaatcacacgcgaagttcagctgggcttatggtggct
agtttggcgggtagcttggctcatgtaacttgcaaggaacctttacgtgctgcaatggca
aaccaccttcgaagtttgttgcaagtggtgaatctctcgggagatgtactggagcaggct
gtgaacttggtgactaatgataatcttgatctaggatgtgcagtcattgaaaaatctgca
acagagaaggctcagagggatctagcaggtgcaatcggaccagcacttactgttcgaagg
aacaagagagatggtagtaatgcagcttattatgatgccgctttctactcgggtccaatc
ttgtccccattgccagagattctccgaccaaaacgaggaaagctgtcaagtgcacaacaa
cgtgtgtatgaggattttgcacgtctgccttggcaaaaccaacctagccaatctgtacct
actctggccggacatccattgggatccagcgttcccacatatgcacccaacgcgagtggt
caggcgaatggatctactcataatcatggtcattgtcaggcagcaattgtaaatggtgga
ttacaccaagcctccgagtcaggagctgatgatctcgaacttcgcggtcagatacctttg
agcttcccgtcacctggatcagtcagcaaagcagatagatcaactctgcaaaaccgtgag
accaacttggtgtcgccgcaattctccgtcaatactgcatcatccctcgacataaatggt
ggaaatgatcctgcggtgttcaagggctcaacgcatacagcaaacttttctcctcaacca
cctttacctacagagcagttgggaccaacggtgatcgagaactctctgaccactggggaa
gtgatggagaagtatcatctggttgcccagaagcttgaaactgcactgtcgaaaatgact
accatgagctatggagccctacctcctgagcatgaagtctgggttattgtgaatgaatta
caagaaatcatcacccagggtatcagtagagatgaggcagctttggtcatcgctcaaaag
atttttcaacgcttatatgaacattctaccagtcatttgcacgttttagtgcatttaaca
attcttgaagcaattcgagatgtctgcaaacgtgttgggaaggaactgactagttgggtt
atatattcggatgaagaaaggcgatataatagagaaataactgttggtttaattcgatct
gagcttatcaatctatcagactacaatgttcaacttaccaagttgatggacggtggccgc
aacaaagatgcagtggattttgctgcttatttagtcaagacttgtgtaattgaagactct
ggtgtaagcaacaccgaattttataatgttattgatgccttgggcaagctagcagctcgg
ccagattctccagtatctttacagcagttggttgatgttgctcggactacctctagcagt
ggtagaccaggaggcactggtttcaataaggaggataagatcaggcttgctaaagacaga
aaggttccctcgggtcgaacttccggtcttagagaggatggaaatgttggaactcgagac
atagctgctggagatcctgctggacttcgagatcaagtggccagcttgtttgatgaatgg
gcgagcatttgtgacgctccaggaacaagtgacaaggcatatgctgtctacgtgtcacac
cttcaacattctggaatgctcaaaggagatgatatctctgacagatttttccgtatatta
attgaacttgctgtggctcactgtttaaactcggagacagtgctacccaactcaggactc
ttcgactcaagccagcaagaatcaaatctttcgtttgcggctattgacatgtttgctaag
ctcgtcttgttactcgtcaagtactatgtggatccatctatgagtaaggtcaaccttctg
aacaaggtcatggttgtcacggtgcgtgtgattcaaagagacttccatgagaggagggca
aactttcaacctcggccatattttcggctgtttgttacatggctccaggacttaaacgct
gcggaccctattcttgactcaagcaatttccaggttctcactatatttggaaccgctctt
ctggcccttcaacccctccaagtacccggttggagctttgcatggctggagctcataagt
caccgaatgttcatgccgaatttgttattaagcaactccccgaaggggtggcctcttttt
cagcgtttgttggtggctcttttcaagtttatggagccgtacttacgcaatgctgatgtc
agtgatcccataaggctattatacaagggcacacttcgggtattacttgtgttactgcat
gactttccagaattcttgtgcgacaatcacttcaccttctgtgatgtgattcccccatcc
tgtattcagatgcgcaatctaattcttagcgcttttccacgcaacatgcgacttcctgat
ccttttacacctaatttgaaggtggacttgcttccagaaattagtcaggctccgcacatt
ctctatgacgttgagcctgctttaaagagcaaacaattgaaggcagaagtggatgaatat
ctcaagacaagaaattctcaatctttccagtctctagatattaaggggcaattgatatta
cctgcaagtgaggttgttccttatggtacaaaatataatgtgcctcttctgaatgccctg
gtgctgtacattggcatgcaggcaatacagcagatgcagaccaaaattacacctcaacaa
ttggcaattccaactgcacctataacccaaagtgcacccatggatatttttcagcgcctc
attattgatttggatactgaaggacgataccttttccttaatgctgtcgctaaccaactt
cgctaccctaacaatcatacgcattatttttcatgcgttttactttatctctttgcagag
gctaatatggaaattattcaagagcaaatcaccagggtgttgcttgaaaggctcattgtg
aatagaccacatccttggggtctgctgatcaccttcatagaacttatcaagaaccctcga
tacaatttctggagccatagtttcacgcgctgcgcccctgaaatagagaagctatttgag
tcagtagctcggtcttgcatgggtccttcattgaagccctctgatgatgatcttgcagca
accctaggagctgaaggtttgaagaactga
DBGET
integrated database retrieval system
