Physcomitrium patens (spreading earthmoss): 112276225
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Entry
112276225 CDS
T01041
Name
(RefSeq) probable pectate lyase P56
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00040
Pentose and glucuronate interconversions
ppp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112276225
Enzymes [BR:
ppp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112276225
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
112276225
NCBI-ProteinID:
XP_024363116
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Position
23:complement(12471640..12473991)
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AA seq
523 aa
AA seq
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MSLRWVWVLLLLSSTCAGADEMRAQVAAAMNSRFPHTMRALGNVTDSLQLVASEGGVIAD
VCTRQIQSANEALIWVRNQLACTPLQELADFFRSAAKAVSSCNAFLAMRADTLPVSMVHT
SEWALMTMKEMLTQLSLDAEAVEVLDRDVSETSGAPLVASSESSSTESKVVTPSDFNDEA
IQGCATIHPTNCQFSVCGKGRRLPLCAFGYAAGVTGGLMGKSYVVTNNEDDHKKPSPGSL
RYGVNQGGQANGGVWITFARSFEIRLTDLLWIKSGTTVDGRGFNVTITGRSMVLCGVSNV
ILHNFQISGVGESDTVHIFAGSSRVWVDHLTSKDAKLGLVSVLQGSTDVTISNSHLSNYN
FNMLLGASDFDKQDADMRVSVYRNWFKDSMQRMPHCRWGRCHVLNNLYSNWGYYALGARV
GGKIYSESNAFVARRRVEVTPWFNGIGANYDNSIFIKSSKDVFLNGTTFHQFLHPHTIGS
HEQNVVYKNNKMYPAVIPPETLNKVLPNCVGAVFGYRLSQCST
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgcgatgggtttgggtgctattacttttgagtagcacttgcgcgggtgccgat
gagatgagagctcaggtcgcggcagcgatgaactcaaggttcccacacaccatgagagcg
ctgggcaacgtcaccgacagtctgcagctggtggcttcggagggtggggtcattgccgac
gtgtgcacgcggcagattcagagcgccaacgaggctctgatttgggtcaggaaccagctc
gcgtgcaccccattgcaggaattggccgacttctttcgaagtgcggcgaaggcagtgtca
tcttgcaatgcgttcctggcaatgcgcgctgatactctgccagtttcgatggtccatacc
agtgagtgggcgctgatgacgatgaaggaaatgctgacacagctgtctttagacgcagag
gcggtggaggttctcgaccgggatgtcagtgagacgagtggtgctcctcttgttgccagt
tccgagtcgtcttccaccgaatccaaggtggtaactccatctgatttcaacgacgaagcc
atccaaggatgcgccaccatccacccgacaaactgccagttctccgtatgcgggaagggg
aggcgtctcccgctctgcgcattcggctacgctgcaggggtgacgggaggcttgatgggc
aagtcttatgtcgtaacgaacaacgaggacgaccataagaagccttcgcccgggtcgcta
cgatacggggtgaaccaaggcggtcaagcaaatggcggagtgtggatcacattcgctaga
agctttgagatcaggcttacagacctgttgtggatcaagagcggaactactgtcgacgga
cgaggattcaatgtcaccataacagggcgaagcatggtgttgtgcggagtttccaatgtc
atcctccacaacttccagattagcggagtgggggagagcgacacggtgcacatctttgcg
gggtcaagccgagtctgggtggatcacctcacctctaaagacgcgaagcttgggttggtc
tccgtgctgcaaggctcaacagacgtgacgatttccaactcgcatttgtccaactacaat
tttaacatgctgttgggcgcttcggacttcgacaaacaagatgcggacatgcgagtgtcg
gtgtatcggaactggttcaaagactcgatgcagcggatgccgcattgccggtggggacgg
tgtcacgtgctcaataacttgtactcaaactggggctactacgcgttgggtgcgcgagta
ggtgggaagatttactctgagtctaatgcattcgtggcaaggaggcgagtggaggttaca
ccatggtttaatgggataggagcgaactacgacaacagcattttcattaaaagctccaaa
gacgtcttcctcaacggcaccactttccaccagttcttgcatccgcataccattggatca
cacgagcaaaacgtggtttacaagaataacaaaatgtatcctgcggtaattcctccggaa
accttgaataaggtattgcccaattgtgttggtgctgtcttcgggtatagactttcccaa
tgctctacatag
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