Physcomitrium patens (spreading earthmoss): 112283716
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Entry
112283716 CDS
T01041
Name
(RefSeq) uncharacterized protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112283716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112283716
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112283716
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112283716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
ARM_Cnot1
DUF3819
NOT1_connector
CNOT1_TTP_bind
Motif
Other DBs
NCBI-GeneID:
112283716
NCBI-ProteinID:
XP_073390937
LinkDB
All DBs
Position
6:17601632..17617692
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AA seq
2053 aa
AA seq
DB search
MRCLSFLKRGLPGSRQIKFSYILLRNCLEQVNLAENDQNLQVKLDLLALVLRNLIHQPNS
GTVLCEALRNLPCVSEEFFANLCRALKLSLPEQIALGIALADAEDISQRQQGQAFFETKV
EEWCQNPISDLSEDLIERILWCLFSNESLLNLQSSFLELLCSTIATVMLFKVNVLSEHGS
HKGAINQLNPSLNWSLIVSRLDYEGFYLPDENAFILFMTMYKLGCEDPFPIDAICGHVWR
NDEGQLSFLRHAILSAPEVFSFVHSTRKLMETSERKLKSPNYAWLSLDLVEVLCRLAETE
HVDEIREILEFPRHHCPELLALSLVQINSDVSLKGSQQSFQEEMLSRILGPLFSQVTLSA
EGETLDPLWSKLWALNPEILKMEMVNLLFSKDHSVYDQVLQMFSFAIQALDSFRERLSEW
PEFIYHILKVRHIHEAQNDILDYIMNIVKENQAVDPSTAVNDSNVCSVVARPIIVKAPTS
LLQDTQVGVRNLKSAVDFVYPAGNRFSGSQSRYLSGQGLDSFLQISARSFSSTAEAQSQN
STQSVPQASLDSLLSLQSGFGTNSQSPFQPIFRATSVTPTQYQPSQPSAEETANNVMSDA
QAKQSAITPSSQPSRTTETVVSSQHSSAEATSLSAAARDFPFSAASNGHTANQAHIRTGT
RSGNASGSFRIAISGFGHALNIETLVAGAGKRDKPIEAPSSEIQDKVAFIINNISWTNLE
AKAEECAEILEEYYPWFAQYVVMKRASIEPNNHDTYIKFLDKMDSKELHKEVLRTTYENC
KVLFASNLIKTHSEERSLLKNLGSWLGKLTIRRNQALRARELDPKSLIIKAYQKGLMIAI
IPFTSKVLESCNQSLAYQPPNPWTMAILSLLVEIYNLPNLKMNLMFDIEVLFKNLNVDVR
EVKHSKLLEGLEREVEGNPDFSNKDPIFSQSPSPALSASSSAPTVPVPSLPQQLDMPPEL
PSVIQPATSLTSSVIAQLIGEERPSLALERAQNVQASSTPSQPSFPSTQASMAIPDLTSY
VVLNAKLAGLGQHLQLARVVPVAMERAIREIISPVVDRSVTIACTTTRELVMKVNYAMES
DENRTNQSANLMVASLAGSLAHVTCKEPLRVAMANYLRTFLQTALAQDVLEQAVNLVTND
NLDLGCAVIEKSATEKAQRDLEEVIAPAFAQRRADRIRTGSAYHDNYMFTNQTLSNLPET
LRPRPGQLSITQARVYGDFARFPWQNQSSHAPVTMAGPPGITNLSGRGIYSVPGRDPGAN
SRASLNGNQSSSVLGATAQVSDPSSDEMDITEPSPLSFSSMACAGGADAQARLSQETSLS
FPIHSNSSTPPPEFNVVETPSASKGMLGSTPSSTPPLPADYVGSTAQEPSLTTGEALEKF
SVVAQKALANEVPEIILQCVSRDEAASAIAQMVFKRLYDNTTSQIHVLVHLNILESIRDV
CRRVVKELTSWVVYSDEDRKFNREITVGFIRSELINLTDYGLHLTKCIDGGRNNDAVSFA
AYLVKTCVIEEAGVTSTEFYNVIEALGKLAARPGTPESLQELVEIAKGTPSTNKDDKGRL
SKEKKELAESHCLNSETSHPVTVGSESRLQEGSNMSFAAIDMVAKLVVLLVKYSSEPSLN
KVNLLTRVLNVTVRTMKRDHDRKAGFHPRPYFRLFVTWLMHFNLTDSTLDSSNYQVLQAF
GYAFLTLRPLDVPGFSLAWLELISHRTFMPKLLLSNAQKGWSLFQKLLVALFKFMEPYLR
NANLSEPVRLLYKGMLRVLLVLLHDFPEFLCEHHFSFCDVISPSCIQMRNLILSAFPRNM
RLPDPFTPNLKVDLLPEISHSPRILSDVETALKSKQLKSEVDDFIKNRNQQTLTSMDLKV
RLTLLPQEAQASGTRYNVPLLNALVLYVGMQAIQQLHSKTSQQVAALTAPITHSAPMDIF
ELLVNDLDTEGRYLFLNAVANQLRYPNNHTYYFSCVLLFLSAEALVDIVQEQITRVLLER
LIVNRPHPWGLLITFIEICGFQNPRYSFWTHSFTRAPEIEKLFESVARSCMTTTLKSSDD
DLSGIPPADRLKE
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgcttatcttttctgaaacgagggctgccgggaagcaggcaaataaaattttca
tatattctattacgaaattgccttgagcaagtcaatttggcagagaatgatcaaaatcta
caagtgaaactcgatttgttggcacttgttcttcgaaatttgatacaccagcccaattct
gggactgtgttatgcgaagctttgcgaaacctcccatgtgttagtgaagagttttttgct
aacctgtgtagagcgctaaagctttccttgccggagcaaattgctcttggaattgctctt
gcagacgcagaagatattagtcaacgccaacaaggtcaagctttttttgagacgaaggtt
gaggagtggtgtcaaaatcctatatcagatttgtcagaagatttgattgaaagaatttta
tggtgtctgttctcaaatgaatcacttctgaatctccagtcttcctttctggaattgctg
tgctctacaatcgctactgtgatgttgtttaaagttaatgtgctttctgaacatggctcg
cataaaggtgctattaatcaactgaacccgagtttgaattggagtttgatagtatcgagg
ctagattacgagggtttttatctgcccgatgaaaacgccttcattctattcatgactatg
tacaaactggggtgtgaggatccttttcctatcgatgctatctgtggccatgtgtggaga
aatgatgagggccaattgtctttcttgagacatgcaattttatcggctccagaggttttc
agttttgttcattcgacaaggaaactgatggagacttcagagagaaagttgaaatcaccc
aactatgcctggctttctctagatctggttgaagtactttgtcgccttgcagagacggag
cacgttgatgagattcgggagattttggaatttccacgtcaccactgtccagagcttctg
gctctgagtcttgtgcagatcaacagtgatgtatctttgaagggatctcaacaaagcttt
caagaggaaatgctttctcggatacttggaccattattctcacaagttactctcagtgcc
gagggggagactcttgatcctttgtggagtaagctttgggctttgaacccagaaattttg
aaaatggaaatggtgaatctcctcttctcgaaggatcactctgtatacgaccaggtcttg
cagatgttctcgtttgcaatacaagcattggattcatttcgtgaacgactaagcgagtgg
cctgaattcatttaccatattctaaaagtacggcacattcatgaagcccagaatgacatt
ctagactacattatgaacatagttaaagaaaatcaggcagttgatccaagtacagctgtt
aatgattctaatgtttgctctgtggtagcacgtccgataattgtaaaagccccgacgagc
cttttgcaagatactcaagttggagttcgcaatttgaaatcagcggttgactttgtctat
ccagctgggaataggttctctggctctcagtcacgatatctatcaggacagggtttagat
tcttttcttcaaatatctgctaggagtttctcgtcaacggccgaggcacaatcgcagaac
agtactcagtctgttccacaagcatctttagattccttgttatcgttacagtcaggattt
ggcacaaattctcaatcaccctttcaaccaatattccgtgctacatctgtaacacctaca
caatatcaaccttctcaaccctcagctgaagagacggctaacaatgtaatgtccgacgca
caagcgaagcaaagtgcgatcactccaagctcgcaacccagtcgaactactgagacagta
gtgtcatcacagcattcaagtgcagaggctaccagcctttctgcagcagctcgtgatttt
cctttttcagcagcctcaaatggtcacacagcaaatcaagctcacattcggactggcacg
aggtctggaaatgcttcaggctcatttcgcatagctatttctggatttggacatgctctt
aacatagagacccttgttgctggtgctggtaaacgggacaagcctattgaggcaccaagt
tcagagatacaggataaagtagcatttataattaacaacatatcttggacgaatctggaa
gctaaagcggaggaatgtgctgaaattttggaagagtactatccatggtttgcccaatac
gttgtgatgaaaagagcaagcatcgaaccaaacaatcatgacacgtatatcaaattttta
gacaagatggattcaaaggagttgcacaaggaagttctcaggacaacctatgaaaactgc
aaggtattattcgcctccaacttgattaagactcactcggaggagaggtcacttctgaag
aatttaggaagttggcttggaaagttaaccattaggcggaatcaagcattgagagcccgc
gaacttgacccgaagtctctaattatcaaggcatatcagaaaggacttatgattgcaata
attccatttacatctaaggtactggagtcctgtaaccagagtctggcttaccaacctccg
aatccatggactatggcaatactaagcttacttgtggagatttataacttacctaatttg
aagatgaatctcatgtttgatattgaggttcttttcaagaatctaaatgtagacgtgagg
gaagtaaagcactcgaagcttctcgagggactggagcgtgaggtggaagggaatcctgat
ttttcaaacaaggatccaatattttcccagtcaccgtcaccagccttgtcggcaagcagt
tctgcacctactgtgcctgtaccatctctacctcagcagttggacatgcctcctgaactt
ccgagtgtcatccagcctgccacatcattgacttcatcggtaattgcacagttaattggg
gaagaaagaccatcacttgcactggagcgcgctcagaatgttcaagcttcgtctactcca
tctcaaccatcgttcccgtccactcaagcgtctatggcaattcctgatttgacatcttat
gttgttctaaatgcgaaattagctggacttggtcaacatctccagcttgcgagggttgtt
cctgtggccatggagcgcgctattagagagattataagcccagtagtagatcgtagtgtg
actattgcttgtacgactactcgggagcttgtgatgaaggttaattatgcaatggaatcg
gatgaaaatcgcacgaaccagtctgctaatttgatggtagctagcctggctggcagtttg
gcccatgttacctgcaaggagcctctgcgagttgccatggcaaattatttgagaactttt
ctgcagacagctctcgcccaagatgtgctagagcaagctgtaaatttagtcacaaatgat
aatctggacttgggttgtgccgtgattgagaaatccgcaactgagaaggcgcaacgggat
ttagaagaggtgattgcacccgccttcgcacagcgaagagccgacagaatacgcacgggt
tctgcttatcatgataattatatgtttacaaatcagactctaagtaatcttcctgagacc
ctgcgtccaagaccaggacaattatccattacacaggcacgggtgtatggggattttgct
cgatttccttggcagaatcagtcaagtcacgcacctgtaacgatggcaggtcctccaggt
atcactaatctttcagggagaggcatttattctgttccaggtcgtgaccctggtgctaat
tctcgtgcgtcattgaatggaaatcaatcttcatcagtacttggagcaacggctcaagtt
tcagatccatcatctgatgagatggacattacagaaccatctccgctaagtttcagctcg
atggcttgtgctggtggagcggacgcacaagctagactctctcaagagacctccctctcc
ttccccatacattccaattcatcaactccgcctccagaattcaatgtggtggagacccca
agtgcctcgaagggtatgctgggatctacaccgtcttctacgccacctttgcctgctgat
tatgttggatctactgcgcaagagccttctctaaccactggagaggctttggagaagttc
agtgtagtggcacaaaaggccctggcaaacgaggtgcccgaaatcattttgcagtgcgtt
agtagggacgaggcagcttcagcaatagctcagatggtttttaagcgtctatatgacaac
actaccagccaaatacatgtactagtccacctcaacatcctggaatccattcgagacgtg
tgcaggagagtggtcaaggaattgactagctgggttgtctactctgatgaggatcgcaag
ttcaatcgggaaattactgttggtttcatcagatctgagttgatcaatttgacagactac
ggtttgcacctgacaaagtgtattgatggaggccggaacaatgacgcagtttcttttgca
gcgtacctcgtgaagacgtgtgtcattgaagaggcaggtgttactagcacagagttttac
aatgtgatcgaagctcttgggaagctggcagcacgaccaggcactcctgagtcattgcag
gagttggtggaaattgcaaagggcacaccaagtacaaacaaagatgataaaggcaggcta
tctaaagagaaaaaggagttggctgagagtcattgtttgaactcggagacttcacaccct
gtcactgttggaagcgagtccaggctgcaagaaggatcaaacatgtcatttgcagccatt
gatatggttgcaaagcttgttgttttgttggtgaagtactcatctgagccatccctgaat
aaggtcaatcttcttactagggttttaaacgtgacagtccgcacgatgaaaagggaccat
gaccgcaaagcagggttccatcctcgcccatacttccgcctctttgtcacatggcttatg
cattttaatttaacagattccaccttggattcaagtaattatcaggttttgcaagctttc
ggatatgcatttttgactttgcgaccgctcgatgtgccagggttcagcttggcgtggtta
gagctgattagtcatcgaacatttatgccgaagttattgttgagcaacgcgcaaaaagga
tggtctttatttcagaagttgctagttgcactattcaagtttatggaaccatatcttcga
aatgccaacctaagtgaacctgtgcgactgctttataaaggcatgttgcgagttcttctt
gtgttacttcacgatttcccagagttcttatgtgaacatcacttcagcttttgtgatgtc
atttcgccatcttgcattcaaatgcgcaacttgattctaagtgcgtttcctcgcaacatg
cgtcttcctgatccatttactcccaatctcaaagttgatttgttgccagaaatatctcat
tcacctcgtattctctcagatgttgaaacagcgttgaaatcgaagcagctgaaaagcgag
gttgatgatttcattaagaaccggaatcaacaaacactcacatccatggacttgaaggta
cgattgactctgttacctcaggaggcgcaagcttctggcacacgctacaacgtgcctctt
cttaacgctttggtgctttacgtcggaatgcaggctattcagcaacttcatagcaagaca
tcacagcaggtggcagcactcacggctcctattacccacagcgctccaatggacatattt
gagctacttgtcaatgaccttgacaccgaagggagatatctgtttctgaatgctgtggcc
aatcagctgcgctaccccaacaatcacacatattatttctcgtgtgttcttttatttctc
tctgctgaggcattagtagacatcgtccaagagcagattactcgtgtgctgctggaaaga
ttaattgtcaatcggccacatccttggggccttcttattaccttcattgagatatgtggc
tttcagaatccacgttacagcttttggacacacagctttacacgtgctccagagattgaa
aagctatttgagtcagtggctcgatcatgtatgactactacattgaaatctagcgatgat
gatctgtccggaattcctccagctgaccgcctgaaagagtga
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integrated database retrieval system
