Physcomitrium patens (spreading earthmoss): 112284982
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Entry
112284982 CDS
T01041
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00040
Pentose and glucuronate interconversions
ppp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112284982
Enzymes [BR:
ppp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112284982
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112284982
NCBI-ProteinID:
XP_073391530
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Position
7:11367815..11370134
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AA seq
542 aa
AA seq
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MASSSCSPPPGCRFRFVKARHLLCHVVFLVYALQGSHVHCERVTALTGSTASHSPRAFAG
DVSRNYSLSEDFRRISILRTIFRSIADFLEFPGINVGDKNIEQDRSRNLDNPSEDDIEVP
EKFIDTSVAEYISSADNEEYVLCFGPNQPLLSRCLTFLNFNVSVSHKFPGIHFRRDQAEG
SGDDAVGTPHLLMPGDTPYTCKSGNYIDDCWWCDPNWQVRRQALANCVIGFGQNATGGKN
GKLYVVTSNKDDIKKPEAGTLRFGVTRSEPLWIIFNGSMTIRLAGELVMTSDKTIDGRGA
EIHLVGSSQITIEEISNVIIHGIHIHDIISSGPHHILTAPSQHSLRAKTTGDAIQIKQSR
HVWVDHCFLSKAADGLVDGTKNSTFITVSNCYFEKHNKVMLFGAAPEDDFDRNMQVIVAF
NRFGPGLTQRMPRCRYGNCHVANNFYTDGWGLYAIGGSEDPTILSQANRFIAPDATDRKE
VTSVTPSQLFPRSRSALFASGAFFVGSGVQNASSAVDDRARSFVPRHASWAPSMTEDAGP
LS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttcttcatgcagtcctcctcctggatgcagattcagattcgtgaaagctcgc
catcttctctgtcacgtggtttttctggtctatgcgctacaggggtcacacgtacactgt
gaacgtgtgactgctctgactggcagcacggcttctcactcaccaagggcatttgcagga
gatgtgtctcgtaattattccttgtctgaggacttccgaaggatatccattttacggacc
atctttcgatccattgccgacttcttggaattcccaggtataaatgtaggtgacaagaat
attgagcaggatcggtcgagaaatctcgacaacccttctgaagacgatatcgaagtacca
gagaagtttatcgatacatcagtcgccgaatacatctccagcgccgacaatgaagagtat
gtcctctgttttggaccaaaccaaccactgctttcacgttgtttaacttttttgaacttc
aatgtttcggttagtcataaatttccaggcattcattttcgcagagatcaggctgagggt
tcgggtgacgacgcagttggcacgccacatttgctcatgccaggggacacgccatacaca
tgtaagtccgggaactacattgacgactgctggtggtgtgatccaaattggcaagtccgt
cgccaggcgctggcaaactgcgtaattggctttggacagaatgcgacaggaggaaagaac
ggcaaactatatgtcgtcacctccaataaagacgacatcaagaaaccggaagcgggaact
ttgcgttttggcgtgacgagatccgagcctctatggataatcttcaatgggagcatgacc
atcaggctggcaggggagctcgtcatgaccagcgacaagaccatcgacgggcgcggtgca
gagatccaccttgtgggatcgtctcaaatcaccatcgaggaaatctcaaacgtgatcatc
catgggattcacatacatgacatcatctcctctggcccccatcacattctcacagcgccc
tcgcagcactctctccgagctaagaccacaggtgatgctatccaaatcaagcaatcgcgt
cacgtctgggttgaccactgcttcctatcgaaggccgccgatggccttgtcgacggaacc
aagaactcgacgttcattacagtctcgaattgttactttgagaaacacaataaggtgatg
ttgtttggagccgctcctgaggatgacttcgacaggaacatgcaggttatcgtcgctttc
aacagattcggacctggccttactcagagaatgcccagatgccgctacgggaactgccat
gttgcaaacaacttctacaccgacgggtggggtttgtatgccatcggtggtagcgaggac
ccaaccattctgagccaagcaaataggttcattgcccccgatgctacagacagaaaagag
gttacaagcgttacaccctctcaactcttccctcgttctcgctctgcacttttcgcgagt
ggagctttttttgttggatctggagtgcagaatgcatcatcagctgtcgacgacagagct
cgcagcttcgtgcctcgccatgcctcgtgggcgccaagcatgaccgaggatgccggtcct
ctcagttga
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