Physcomitrium patens (spreading earthmoss): 112286737
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Entry
112286737 CDS
T01041
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112286737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112286737
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
112286737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_14
TPR_8
TPR_1
TPR_11
TPR_16
TPR_7
TPR_CcmH_CycH
TPR_12
ARM_TT21_C
BTAD
TPR_Slam
Pyruv_OxRed_insertion
Motif
Other DBs
NCBI-GeneID:
112286737
NCBI-ProteinID:
XP_024384706
UniProt:
A0A2K1K2U0
LinkDB
All DBs
Position
9:7373503..7383963
Genome browser
AA seq
1623 aa
AA seq
DB search
MEDAKAALLRAAEQALEQKNFPDVVKNCKQILKQDRASYGAYVLLAKALQGTNHFPQALV
ALRKAVEQDKSALPAWLAFMDLYEASAEFDKFLEACNTVRQITQTSGDMKNFASCTERLA
STYVKTGRHEEALGVWEELLKADKVVTPDTQLRALCGVIDAQASLFDLATQQKREKDSAT
LLGVHTVESLRDGLETNLHIALQKPGLHVERYNALLLDLLLRTTRESRGKDSQLRLLQQA
IATTLSSNVLTGYEVALVLCEEDHADFLFQNVNSTESTKNGVPYFRLRLGLRFAHLYPSH
GLALATIASLSQSSADRKKVLCEKALRADDTCLIGWQLLADLQIAEGAYSGAADSIKRGF
KSLELWRTKYGLQLFAKELRLHLTEGHLHLETKAYEEAERVYRFVLDGADKLGNREAEEL
VKAALEGRVKVAIAQDDLKETEDRLEALLSFDNTNHWALAEKGWLDFKKGNAENAVHLLE
KAVAICGNNSTYRRRLGLSYWETGEQSGKERAVAQLVEAARLDPKEAGVFRYLGHYYYQI
AGDMRRAARSYQKAINLDPEDLEAGEALCNLLEKGGQIVLEGAICREASQHSPRAYWAWR
RLGYIQVQAKQWSEAVSNLQHALRGYSSDGCLWEALGLAYQQLGMLTAALKAYERVVSLG
NTSPIFALLQSGIILQSLASYTQAIDIFRNALDKVPGNVVAQCGLAAALLGRARQCTSVG
ALAWAARLLQEAADAAHQCTSSNGTVAAAWKLLGDIEVAYAQILPCDLMDSISDGITRED
FNEQEAASFCDQVLLWYQQRKAASKRAQRAYLHLLHICPQQGHVYGDLAMAIKLDHSLDQ
NAPPSESTRLDPERTVLSGLRLDTSRADLWFIFGVLVQHKALKQHAFIQALRLDAYHSST
WAHLGQLYLQERELELAKQAFDRSRSADPTLSLPWAGMAFLHSLSDGKKEMDEAFASCLY
AVHLLPVMQVQLGLARLAERTRHLSTAQVYAAIEQCVQRAPHSVEALNLKGLVCESRGSL
STAISAFQLARHIIEEGLGKTNSTAAGKLNCVLLNLARVLCKAGRARDAVQVYEILVDSG
VLMEEPEALRSYAVAAWLGNRKELAAAIAQQAVEVNGESASHTLFFRMTYWLSRPLLVLE
DLRRASMDLFRNMIFGSTALAMAIMADHQQSVAGVLYRSNILFDHERGPQAHHLVADWKQ
GKHEEGHLYNSTIEELLKAMHSFPDSISTRAKLGQKLTESTYGNCAYLSLRCCDVPGPVP
QQDLCTSLVGAVLADATNAEHSVLPKLLRWVHMEPWNKTAKSSLVLTLQQVQKPNVHLAV
GRLALTQPVSDPVSLDIDVLLKVCASNAALEHGDTAAALQHAKAACLLNASAECNFVASF
HLARCYLATQNLPLLRVEVKKCRRNLKPDDLLGHLKLSEMEDKLGLQTENQNSSFERAIG
LKSTAHPKVWTSLWHLRKAQGLLQAEDYISAEKAAGQACAVHPESAPLHLFHGALCLSLF
NLGGYPQQLTSAVRSLSKAASQGGPSEVCVAGVLLAQAETSKGNIRSRNAQKWEQVLRSA
WKCWPAEDRPGELYFQMGLLAEQFKDTSHAGMYAPESLQSKRSWMQRAAHANPACRRYWE
LLL
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgctaaggctgcgttattgcgcgcagcagagcaggccttggaacagaaaaat
tttcccgatgtggtgaagaactgtaagcaaatactgaagcaagaccgcgctagctatggc
gcatatgtcctcttggccaaggcgctgcagggtaccaatcacttcccgcaagccctggtt
gctcttcggaaggcagtggagcaggataaatctgctctaccagcatggctggcattcatg
gatctatatgaagcaagtgcagagtttgacaaatttctagaagcttgtaatactgtgagg
caaatcacgcagacctctggtgatatgaagaattttgcatcctgcacagagagattggcc
tccacatatgtcaaaactgggcgtcacgaagaagcactaggtgtctgggaggagttgttg
aaagcagacaaagttgtgacacctgatacacagttaagggcgctttgtggtgttattgat
gcacaagcttcattgtttgatttggcaacgcagcagaaaagagaaaaggattctgctact
cttttaggggttcacactgtggaatccttacgggatggcttggagacaaacctccatatt
gcactccagaagcccggtttgcatgttgagcgctataatgcactgctactggacctcctt
cttcgaacaacgagagaatctagagggaaagattctcaacttcgacttctacagcaggct
attgcgacaaccttatcatccaacgttcttactggttacgaagtggctcttgtcctctgt
gaggaagaccatgctgactttttattccaaaacgtaaatagtacggaaagtacgaagaat
ggagtgccttactttagattaagacttggattgcggtttgcgcatctttatccatctcat
gggcttgcccttgctacaatcgcatccttgtcacaaagcagtgcggatcgcaagaaggtc
ttgtgtgagaaagcacttcgagctgatgacacatgtttgatcggatggcagttattagct
gatctgcaaattgcagaaggtgcatatagtggtgctgcggacagtataaagcggggattc
aaatcactcgagttatggagaacaaagtacgggttgcagctttttgctaaagagctgcgt
ctacatcttacagaggggcatttgcatttggaaacaaaagcctatgaagaagcagaaagg
gtgtatcgatttgtattagatggtgcagacaaattgggtaacagagaagctgaagaatta
gttaaggctgcccttgagggaagagtgaaggtagcaatagcacaagacgacttaaaagag
accgaagatagattagaggctcttttgtcatttgacaatacaaatcattgggctttagca
gagaaaggctggttggactttaagaaaggcaatgctgagaatgctgtgcatttattagag
aaagccgtggcgatctgtgggaacaactctacttaccgccgtcgtttgggtttgtcatac
tgggaaacaggtgagcaatctggtaaagaacgagcagttgcacaattggtggaagctgcg
aggttggatccgaaggaggcaggtgttttccgttaccttggacactattattatcaaata
gctggtgatatgcggcgagccgcccgatcttaccagaaggcaatcaatcttgatcctgaa
gatttggaggcaggggaagctctttgtaatctactggaaaaaggaggacaaattgtgttg
gaaggtgccatatgtcgagaagcctctcaacactcgcctcgagcttattgggcatggcgt
cgacttggctatatccaggttcaagcgaaacagtggtcagaggctgtgtcaaatctgcaa
catgcacttcgaggctacagctcggatggatgtctgtgggaggcgttgggattggcttat
caacaacttggtatgctaactgctgctctgaaggcatacgaacgagttgtgtctttggga
aatacatctccaatatttgccctacttcagagtggtatcatcctccagtcacttgcatca
tatactcaggctattgacatattccgtaatgctctcgacaaggttcctggaaatgtggtc
gcgcagtgtggtcttgcagctgcacttttaggtcgtgctcgtcagtgcacaagtgttgga
gccttggcttgggctgcgagacttttacaggaagctgctgatgctgcacaccaatgtaca
tcaagtaatggtactgttgccgctgcgtggaaactattgggagatattgaggttgcatat
gctcaaatattgccatgtgatctcatggattccatatcagatggtatcacccgagaggat
ttcaatgagcaggaagcggcttctttttgcgaccaggttctactttggtatcagcagcgt
aaagctgctagcaaaagagcgcaacgcgcttatcttcatttacttcatatatgtcctcag
caaggccatgtgtatggcgatctagcaatggccataaagcttgaccactcgttagaccag
aacgcaccaccgagtgaatcaacaaggttggatccagaaagaactgttttatcaggattg
cgcttagatacttcacgtgcagacctctggttcatatttggtgtgttggtacaacacaaa
gctctgaaacaacatgcctttattcaggctctacgactagatgcatatcattccagcact
tgggctcatctaggacagctttacctgcaagagagggagcttgagttagcaaagcaggca
ttcgatagatctcgaagtgcagatccgactctaagcctaccgtgggcgggtatggccttt
ctgcacagcctcagtgatggaaagaaggagatggacgaagccttcgcgagttgcttgtat
gctgtgcatctactaccagttatgcaagttcaacttggccttgcaaggttagccgaacgc
acccgccacctatctacagcacaggtatatgcagccatagagcagtgtgtacaaagagca
ccccatagtgtagaagcgctcaatctgaagggccttgtttgcgagtctcgagggagcctg
tcaactgcaatctccgcttttcagctggcacgtcatataattgaggaaggactggggaag
acgaattcaacagctgcaggaaaattgaattgtgtattgttgaaccttgcaagggtctta
tgcaaggctggcagagcaagggacgcagttcaagtgtacgagattcttgtagattcaggc
gtactgatggaagagccagaggcactgcgaagctacgctgtggcagcatggcttggaaat
agaaaagagctagctgctgctattgcacagcaggctgtagaagtgaatggagaatcagca
tctcatacactcttcttcagaatgacgtactggctttcaaggcctctccttgtcttggag
gacttaagaagggccagtatggatctttttcgtaatatgatttttggttctactgctctt
gctatggccataatggcggatcaccagcagtctgtagccggtgttctgtataggtctaat
attttatttgaccatgaaagaggtcctcaggcgcatcatttagttgccgattggaaacag
ggcaagcatgaggaagggcatttgtacaatagtacaattgaggaattgctgaaggccatg
cattcatttccagacagcatttcaacacgggctaaactcggtcagaagcttacggaaagc
acttacggtaattgtgcttacctttctctgagatgctgcgatgtacctggtccagttcca
caacaagatttgtgtaccagtttggtaggcgcagtattggctgatgctactaatgccgaa
cactcagtacttccaaaattacttcggtgggtacacatggagccttggaacaaaacggca
aaatctagtttggtactcacattacaacaggtgcaaaagccaaatgtacaccttgcagtt
ggtcgtcttgcactcacacagccagtgtctgaccctgtatccttggacatagatgtacta
cttaaagtatgtgcctccaatgcagcattagagcatggggatactgcagctgctttgcag
catgcgaaagctgcatgcttattgaatgcgtcagcagagtgtaattttgtcgctagcttt
catctggcacgttgttatctagcaacccagaatctcccgctactgcgagtggaggtcaaa
aagtgtagacgaaatttaaaaccggatgaccttttgggacacttgaagttgtcagaaatg
gaggataagttgggtttgcagacagagaaccaaaattctagttttgagcgtgctattggt
ctgaaaagtacagctcatccaaaggtgtggacttcgttatggcatctaaggaaagcccaa
gggcttttacaagcggaagactacatctctgctgagaaagctgctggtcaagcttgtgcc
gtccatccagaatctgcccctcttcatctctttcacggtgcactctgcctctcactattc
aacttaggaggctatccacagcaattaacttcagcagttcgcagtctaagcaaggctgca
tcacaaggaggaccttccgaggtctgtgtggctggtgttttactggcacaagctgaaacc
agtaaagggaacattcgtagtagaaatgctcaaaagtgggaacaagttcttcgatcggca
tggaaatgctggcctgcagaggacagacctggggagttgtattttcagatggggttgctt
gctgaacagttcaaggatacttcacatgcaggcatgtacgctcctgagtcgttacaaagc
aagcggtcgtggatgcagagagctgcccacgcaaatccagcttgccgccgctattgggaa
ttgttattgtag
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