Paenibacillus polymyxa SQR-21: PPSQR21_002420
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Entry
PPSQR21_002420 CDS
T03178
Symbol
pelB
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq00040
Pentose and glucuronate interconversions
ppq01100
Metabolic pathways
ppq02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PPSQR21_002420 (pelB)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PPSQR21_002420 (pelB)
Enzymes [BR:
ppq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PPSQR21_002420 (pelB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Glyco_hydro_59_C
3keto-disac_hyd
Laminin_G_3
DUF6250
Laminin_G_1
Laminin_G_2
Beta_helix
SO2946-like_C
Motif
Other DBs
NCBI-ProteinID:
AHM63953
LinkDB
All DBs
Position
284625..286718
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AA seq
697 aa
AA seq
DB search
MKSSLLKKCASVMLSSTLALSLSLPLLGHAQADENVQVSDDFEQGEAQGWSADSGNWSVV
KDGNGSTYQQSSRSESHSVKGNTSWTNYSVQADVYVNDFNGSNRVYVAGRYTDSNNFYAA
SLYNKKGGALEIRKKVNGSMKTLATNKKYKLDTNTWYRVKLELSGSEIKMYVNDQLELSA
TDASLTAGAMGLVTSKTVAQFDNVIVSGASSEGGTSTPPVKPTPGTEQPTPGVEPSVTSK
NNYNLTGFSYGNTGGGNIADTDANYKKVYNAVDLNEALKKGSKVKVIEIMNDLDLGWNEI
PSAAKAMPFSANNPVQTHPVLKKTGVSKVYIENMNGVTIFSANGAKIKHAGFVIKRSSNL
IFRNLEFDELWEWDEATKGNYDKNDWDYITIEGASSKVWIDHCTFNKAYDGLVDVKKGSN
GVTISWSLFRGDDRSSSSWVTQQVNAMEADKSSYPMYAYLRSSAVGMSKEDIIDIAARQK
KAHLVGATEMAGDNADLEVTLHHNYYLDIQDRMPRLRGGNAHAYNIVMDDAGLARAKKRI
TSDMAKAIAAKGYHFDVVGNGAISTENGAVLLEKSYLIDVFSPVRNNQKDPNKADYTGKI
KAEDVILSDNGAVFRGGSDAANSPLAPYPAKAKTFSWNGFTTLPYSYTAEDPANLVAQLQ
AKDGAGAGKLNWSSENWLKTVYNTAATKDVQVEEDSE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgagtttgttaaaaaaatgtgcaagtgtaatgttaagcagtacgttggcactg
tctttatcattaccgctattaggccacgcacaggctgatgagaatgtacaggtaagtgat
gattttgaacaaggagaagctcaaggctggtctgcagattcggggaactggtctgtggtc
aaggacgggaatggttctacataccaacaatctagtcgaagcgaaagccattccgtaaaa
ggcaatacctcatggacaaattatagtgtgcaagcagatgtatatgtaaatgattttaat
ggctctaatcgagtatatgtggcaggtagatacacggattctaacaacttctatgcagca
tcgttgtacaacaagaaaggcggagcccttgagattcgtaaaaaagttaatggatctatg
aagacactggctaccaataaaaaatacaaactggacaccaacacatggtacagagtgaag
ctggagctatccggttcggaaatcaaaatgtatgttaatgatcagctggagctgtccgca
acagacgccagcctcacagctggagctatgggtctggtaacgtccaaaaccgttgctcag
ttcgataatgtgattgtatccggtgcttcttcagaagggggtacaagtacaccacctgtg
aagccgacaccgggtacagaacaaccgactcctggggtggagcctagtgtaacctccaaa
aataactataatttgactggcttttcgtatggtaatacaggtggtgggaacattgccgat
accgatgccaattacaaaaaggtgtacaatgctgtagatcttaacgaagcactgaaaaaa
ggcagcaaggttaaagtgattgagattatgaatgatctggaccttggctggaatgaaatt
cctagcgctgcgaaggcaatgccatttagtgccaacaatcctgtacaaacacatcctgtt
ctaaaaaagacaggggtgagcaaagtctatatcgagaatatgaatggagttacaatcttc
tcggccaatggtgcgaaaatcaagcatgccggttttgtcatcaaacgaagttctaatttg
attttccgtaaccttgaatttgatgaactttgggaatgggatgaagcaaccaaaggaaac
tatgacaaaaatgactgggattatattaccatcgaaggtgcaagctctaaggtatggatc
gaccattgtacatttaacaaagcctatgatggcctggtagatgtgaaaaagggcagtaac
ggagttacgatttcctggtccttgttcagaggagatgaccgcagctccagcagctgggta
acccaacaagtcaacgcgatggaagcagataagtcctcctatcctatgtacgcttatttg
agaagcagtgcagtgggcatgagtaaagaagatatcattgatattgcagcacgacaaaag
aaagcgcatctggtgggtgccacggaaatggcaggcgacaatgcggatttggaagtgacg
ctgcatcataattattatctggatattcaggaccggatgccgcgtttgcgcggtggtaat
gctcatgcgtataacatcgttatggatgatgctggattggccagagccaaaaaaagaatt
acgtccgacatggccaaagcgatcgctgccaaaggatatcattttgacgtcgtgggtaat
ggtgcgatttcaacagaaaacggcgcagtactgctagaaaaatcgtatttaattgatgtg
ttttctccggtgcgtaacaatcaaaaagaccctaataaagcggattatacaggtaaaatc
aaagccgaggatgttatcctttcggataacggtgccgtatttagaggcggcagtgacgct
gcgaatagcccgttagctccttatccagcgaaggctaagaccttctcttggaatgggttc
acaacgttgccatacagctatacagccgaagaccctgccaacctggttgctcaattgcag
gccaaggatggagcgggcgcaggcaagctgaactggtcgagtgagaactggctcaaaacg
gtgtacaatacagccgctacgaaagacgtacaagtggaagaagattccgagtag
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