Paenibacillus polymyxa SQR-21: PPSQR21_048620
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Entry
PPSQR21_048620 CDS
T03178
Name
(GenBank) helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03022
Basal transcription factors
ppq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PPSQR21_048620
09124 Replication and repair
03420 Nucleotide excision repair
PPSQR21_048620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppq03021
]
PPSQR21_048620
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_048620
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PPSQR21_048620
Transcription machinery [BR:
ppq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PPSQR21_048620
DNA repair and recombination proteins [BR:
ppq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PPSQR21_048620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
ResIII
Helicase_C
preSET_CXC
Motif
Other DBs
NCBI-ProteinID:
AHM68446
LinkDB
All DBs
Position
complement(5496427..5498778)
Genome browser
AA seq
783 aa
AA seq
DB search
MKEPIHISVRPLVEYVHRSGSIQSGFRSNSSMQEGTRVHQVIQKGYKEHDRKEVHLRTEI
LYEGELFIIEGRCDGLIELDGVWTVDEIKSISQPLEDIQGDGQPVHWAQAFLYAYMIARE
EQHHSMQVQLTYVQAHSENIRRFRRMLAFAELEAFAQEMIAGYAPYAFLLRAHAEKRDTS
IAMLEFPFDTYRSGQRTLAGSVYKTIAEGVNLFAKAPTGIGKTVSTLYPAIKAIGEGLAR
RVYYVTARTTTRAAAEEAYARMQAQGLHMHVVTLTAKDKICFKDENDCDAGACSMCEGYY
DRINGAVSDILANETLMTRAVIEHYARKHKVCPFEFSLDVAYASDGIISDYNYVFDPRIS
LKRLLEEHKRKGVVLVDEAHNLVERGRDMFSAEILKSSFLELKREFKLLSPEIAAAASAV
NAHMITLRKLHADTGKAVETSAPQGVLELLVPFVEAAERELVAGSSTSRASSEGTAYALL
LDTYFTAQNMLRIAALYDERYVTYIEAGRSEVRIKLFCLDPSHLLGQAVKNYRSTIYFSA
TLTPLAYYRDMLGASEEDYTLQVPSPFHQEQWDVRLLPLSIRYRDRERSKGAIADMLAGL
VAERKGNVLVFFPSYPYLREVYEEFMLRDVSADTLVQSPGMTEPERDRFLDTFQPGQERT
LLGFAVLGGVFAEGVDLPGDRLNGVVVVGVGLPQIGAERDVLRDYFSEQGRNGFNYAYVY
PGMNKVLQAGGRLIRTEHDEGLLVLVDDRFAKEPYASLLPDEWKSYRLTEQADLRKEWMD
YEF
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaccaattcacatttcggtgcgtccacttgtggaatatgtgcatcgaagtggc
agcattcagagcggctttcgttcgaatagcagtatgcaggaaggaactcgcgtgcatcag
gttatccagaaaggttacaaggagcatgaccgcaaagaggtgcatttacgtacagaaatt
ttgtatgagggtgaattgtttatcattgaaggccgctgtgacggactgattgagctggat
ggcgtatggacggttgatgaaattaaatcaatctctcagcccctcgaagatattcagggg
gacggccagccggtgcactgggcacaagcatttctgtatgcctatatgattgctcgtgag
gaacagcatcattccatgcaagttcaacttacttatgtacaagcacacagtgaaaatatt
cgccgcttcagacggatgctagcttttgcagagctggaggctttcgctcaggaaatgatt
gctggttatgcaccgtatgcattcctgctgagagcacatgcggagaagagggataccagt
attgctatgttggagtttccttttgacacgtatcgctcaggtcaacgaactctagcgggt
tcggtgtataagacgattgccgaaggggttaacctgtttgccaaagcacccacaggtatt
ggtaaaacggtatccactttgtatcctgcgattaaggcgattggcgaaggactggctagg
cgagtatattatgtaacggctcgtaccaccactcgggcagcagctgaagaggcatatgcc
cgaatgcaggcccaagggctgcacatgcatgtggtaacgttgacggcgaaggataaaatt
tgcttcaaggatgaaaatgattgcgatgcaggagcatgcagcatgtgcgagggctattac
gaccggattaacggtgcggtgtccgatattttggcgaatgagacgttaatgacgcgggcg
gtgattgagcattatgcgcgcaagcataaggtatgtccctttgaattttcgctagatgtg
gcgtatgcctcggatggtataatcagtgattataattatgtttttgatccacggatttct
ctgaaaagattgctggaggagcacaagcgaaaaggtgttgtgctggtggatgaggcgcat
aatctggtggaacgcggtcgggacatgttttcggcggaaatcctgaaatcttcttttctg
gaactgaagagagaatttaagttgcttagccctgagattgctgcggctgcgagtgcagtg
aacgcacatatgattacgctgcgcaagctgcatgcagatacaggaaaagcagtggaaaca
tcagcaccgcaaggggtgctagagctgttagtgccttttgtggaggcagctgaacgtgaa
ctggtggcggggagcagtacaagccgcgcaagcagtgaggggacggcctacgcattgctt
ctcgatacgtattttaccgctcaaaatatgctgcgaatcgctgctctatacgatgaacgt
tacgttacttatattgaagcggggcgcagtgaggtgaggatcaagctgttctgcctcgat
ccttcgcatttgctgggacaggctgtaaagaactaccgctcaactatatatttttcggcg
acattgacaccgcttgcttattaccgggacatgctcggagcaagcgaggaagactatacg
ttacaggtcccttcccctttccatcaggagcaatgggatgtacgcctgctgccgctctcc
atccgttatcgggatcgtgagcgttccaaaggggcgattgccgatatgctggctggattg
gttgcggagcggaaagggaacgtccttgtgtttttcccgtcttatccgtatctgcgtgag
gtatacgaggagttcatgcttcgggacgtgtctgcagatacgttggtacaaagtccaggt
atgaccgaaccggagcgtgatcggttcctggacaccttccagcctgggcaagagcgtacc
ctgcttgggtttgccgtactggggggtgtgtttgctgaaggcgtcgatttaccgggtgat
cgcttaaacggggtagtggtcgtcggcgtcggcttgccgcaaattggagcggagcgggat
gtgctgcgagattatttttcggaacagggacgaaatggtttcaactatgcgtatgtatat
ccggggatgaacaaggttcttcaggcaggaggcagacttattcgcacagagcatgacgaa
gggctgctggtcctggtagatgatcgttttgccaaggagccatatgcttctttgctgcca
gacgaatggaaaagctaccgtttgacggaacaagcggatttaaggaaggaatggatggac
tatgaattttaa
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integrated database retrieval system
