Photobacterium profundum: PBPRA0430
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Entry
PBPRA0430 CDS
T00173
Symbol
ECS3950
Name
(GenBank) putative DNA-directed RNA polymerase, sigmasubunit
KO
K03086
RNA polymerase primary sigma factor
Organism
ppr
Photobacterium profundum
Pathway
ppr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PBPRA0430 (ECS3950)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppr03021
]
PBPRA0430 (ECS3950)
Transcription machinery [BR:
ppr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PBPRA0430 (ECS3950)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CAG18861
UniProt:
Q6LV14
LinkDB
All DBs
Position
1:complement(443877..445715)
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AA seq
612 aa
AA seq
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MEQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDIVDSDQVEDIIQMINDMGIKVVETAP
DADEIMMTEDNTDDDAIEAAAQALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPSAISYLLEQFDKVEADELRLTDIISGFIDPNEEQTAAPTATH
IGSELSETDLADEDKNLETDDDDEEEEDTGIDPELAREKFLELRHSYEKMALAINTHGRH
NATTEVAVGELSEIFKQFRLIPKQFDKLVRSLRDSMDKVRTNERLIMRMCIDNSKMPKKT
FIKFFAGNESSPDWIDEALNSGKPYAERLKNYEEDLRRSSLKLRILEKETGLSIERIKDI
SRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPIPE
ELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAATATNLR
AATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDVLRSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaatccgcagtctcagctaaagttacttgtcgcaaaaggcaaagagcaaggc
tatctgacctacgccgaagtaaatgatcacctaccggaagatatcgtagactccgatcag
gttgaagacattatccaaatgatcaatgacatgggcatcaaggttgtagaaactgcacct
gatgccgatgaaatcatgatgacagaagataatacagatgacgacgctattgaagcggcg
gctcaggcattatctagcgtagaaagcgagatcggtcgtactactgatccagttcgtatg
tacatgcgtgaaatgggtacagtagaactactgactcgtgaaggcgaaattgatatcgcc
aaacgcattgaagatggcatcaaccaagttcagtgttctgtagcagaatacccttcagcc
atctcttacttacttgaacagtttgataaagttgaagccgatgagcttcgtcttaccgac
atcatctctggctttattgatccaaatgaagagcaaactgctgcaccaacagcaactcac
atcggttcagagctaagtgaaacagatcttgcagacgaagacaaaaatctagaaacagat
gacgatgacgaggaagaggaagacactggtattgatccagaacttgctcgtgaaaagttc
cttgagctacgccactcgtacgaaaaaatggcattagccatcaatacgcatggtcgtcac
aatgcaacgactgaagtcgctgtaggtgagctttctgaaatctttaagcaattccgttta
attccaaaacagtttgataaacttgttcgctcactacgcgattcaatggataaagtacgc
acgaacgagcgtcttatcatgcgtatgtgtattgataacagtaaaatgccaaagaagaca
ttcattaaattcttcgcgggtaatgagtcatctccagactggattgatgaagcactaaac
tctggcaagccatacgcagagcgtctgaaaaactatgaagaagatcttcgtcgttcatcg
cttaaattgcgtattcttgaaaaagaaactggcttatcaattgaacgtataaaagacatc
agccgtcgtatgtctatcggtgaagcaaaagcgcgccgagcgaagaaagagatggttgaa
gcaaacttacgtttggttatttcgattgcgaaaaagtacaccaaccgtggtctacaattc
ttggatctaatccaggaaggtaacatcggtcttatgaaagctgttgataaatttgaatac
cgtcgtggttataagttctcaacttatgcaacatggtggattcgtcaggcgatcactcgc
tcgattgctgaccaagcacgtactattcgtatcccagtgcacatgattgagacgatcaac
aaattgaatcgtatttctcgtcaaatgctacaggaaatgggtcgtgagcctattccggaa
gagttggctgagcgcatgcaaatgcctgaagacaaaatccgaaaagtgcttaagattgcg
aaagagccaatctcaatggaaacaccaattggtgatgatgaagattcacacctaggcgac
ttcattgaagataatacgttacagcttccaatggatgcagcaacagcaactaacttgcgt
gcggcaactaacgatgttctagcgggtcttacgccacgtgaagcgaaagtacttcgtatg
cgttttggtatcgatatgaacactgaccacactctagaagaagtgggcaagcagttcgac
gtaacgcgtgagcgtattcgtcaaatcgaagccaaagcattacgtaagcttcgccaccca
agccgttcagacgtgctacgtagcttccttgacgagtaa
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