Pseudomonas protegens CHA0: PFLCHA0_c56160
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Entry
PFLCHA0_c56160 CDS
T02671
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PFLCHA0_c56160 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprc03021
]
PFLCHA0_c56160 (rpoD)
Transcription machinery [BR:
pprc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PFLCHA0_c56160 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AGL87345
UniProt:
A0A2C9EUL8
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All DBs
Position
6242988..6244835
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AA seq
615 aa
AA seq
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MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGITPPAAE
VPPPVDTKTAKADDDSEDEEAEATEDEEEAESGPDPVIAAQRFGAVADQMEVTRKALKKH
GRENKQAIAEMLALAELFMPIKLVPKQFEGLVERVRSALDRLRQQERAIMQLCVRDARMP
RADFLRQFPGNEVDESWTDALAKGKSKYAEAIARLQPDIIRCQQKLTALEVETGLKIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcctcaaagagttgatcagccgtggacgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttttgttggccgaagccgataccgacgaagcagcagctgaa
gaagccgccgcagcgttggcggctgtggaaaccgacattggtcgcactaccgacccagtg
cgcatgtacatgcgcgaaatgggcacggtagagctgctcacacgtgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggtatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgatcacatcctctccgagtacactcgcgtcaccaccgaaggtggacgcctg
tccgacgttctcagcgggtacatcgacccggatgacggcattacgccgcctgccgccgaa
gtgccgccgcctgtcgacaccaagaccgcgaaagcggatgacgacagcgaagacgaagaa
gcggaagcgaccgaagacgaagaagaagccgaaagcggtccggatccggtcatcgccgca
cagcgctttggcgccgtcgccgaccagatggaagtcacccgcaaggcgctgaagaaacac
ggccgcgagaacaagcaagccatcgccgaaatgctggccctggctgaactgttcatgccg
atcaaactggttccgaagcaattcgaaggcctggttgaacgtgtacgcagtgccctggat
cgcctgcgccagcaggaacgcgccatcatgcagctctgcgtgcgtgatgcccgcatgcca
cgtgccgacttcctgcgccagttcccgggcaacgaagtggatgaaagctggaccgacgcc
ctggccaaaggcaagagcaagtacgccgaagccatcgcccgcctgcagccggacatcatc
cgttgccagcagaagctgaccgctcttgaagtcgaaacaggcttgaagatcgccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagag
atggttgaagccaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgtggc
ctgcagttcctcgacctgatccaggaaggcaacatcggcttgatgaaagccgtggacaag
ttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccattcgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccggcagatgctgcaggaaatgggtcgcgaaccg
actccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggtattg
aagatcgccaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcccat
ctgggcgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccacagttgag
agcctgaaggaagcaactcgcgaagtactctccggcctcactgcccgtgaagccaaggta
ctgcgcatgcgcttcggcatcgacatgaataccgaccataccctcgaggaagtcggtaag
cagttcgatgtgacccgtgagcggatccgccagatcgaagccaaggcgctgcgcaagctg
cgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtaa
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