Poeciliopsis prolifica (blackstripe livebearer): 129372462
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Entry
129372462 CDS
T09758
Symbol
tardbpa
Name
(RefSeq) TAR DNA binding protein, like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129372462 (tardbpa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129372462 (tardbpa)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
129372462 (tardbpa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
129372462
NCBI-ProteinID:
XP_054905778
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MSELYIRVAEDENEEPMEIPSEDDGTVLLSSVSAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPESSWGNLVYVVNYPKDNKRKMEEIDAASAVKIKRGFQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVIAQRHMIDGRWCDCKLPN
SKASPDEPMRSRKIFVGRCTEDMTTDDLRQYFMQYGEVTDVFIPKPFRAFAFVTFADDQV
AQALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGRFGAGGFSQGYGSNRGGLGSGSGGV
NFGALGLNPAMVAAAQAALQSSWGMMGMLANQQGLTTAAGTASTTRDQTYSSASTSYSSP
SSASLGWAGGTNTASSSGFSSGFGTSMESKSSSWGM
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagctgtacattcgggtggctgaggatgagaacgaggagcccatggagatccct
tcagaggacgatgggactgttctactgtcctcagtatcagcccagttcccgggggcttgc
ggacttcggtacagaaacccggagtcccagtgcatgaggggtgtccggctggtggagggc
gtcctgcatgcaccagagagcagctggggaaacctggtctatgtcgtcaactatcccaaa
gataacaaaaggaagatggaggaaatcgacgcggcatcggctgttaaaatcaaaagaggt
tttcagaaaacgtcagacctcatagtcctcgggttgccttggaaaacaacagaacaggac
ttgaaggattactttagcacctttggggaggtcattatggtgcaggtgaagagagatgca
aaaactggaaactcaaaaggttttgggttcgtccgctttgcagactatgagacgcaaact
aaagtcattgctcagagacacatgattgacggacgatggtgtgactgcaaacttccaaat
tcaaaggcatctcccgatgaaccgatgcggagccgcaaaatctttgttggccgctgcaca
gaggacatgacgacggacgatctgagacagtacttcatgcagtacggtgaagtcactgat
gtcttcattcccaaacctttccgggcctttgcatttgtcacatttgctgatgatcaggtc
gcccaggctttgtgcggagaggacctgatcatcaagggcgtcagcgtgcacatctccaac
gctgagcccaaacataataacagtaggcaaatgatggatcggggtcggttcggggctggc
gggttcagtcaggggtacggcagtaatcgtgggggcctaggcagcggtagtggaggggtt
aactttggggctctgggccttaacccagcgatggtggcagcagctcaggcagcgctgcag
agcagctggggaatgatgggcatgctggctaaccagcagggcttgaccacagcggcaggc
acagcctctaccaccagagatcagacgtatagctctgccagcaccagctacagcagcccc
agctcagccagcctgggctgggccggaggcactaacacggcctccagcagcggcttcagc
tccggctttggcacgtcaatggagtcgaagtcttctagctggggaatgtag
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