Pimephales promelas (fathead minnow): 120459054
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Entry
120459054 CDS
T08155
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120459054 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120459054 (cnot1)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120459054 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120459054 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
120459054
NCBI-ProteinID:
XP_039502883
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGTSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGDLNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGVQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLTPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMSS
LSLGVSSTSHTPSMQGFPNLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSSSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFK
NRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQA
QSQTPKAPLPVQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPVSEHRPMPSINTTNI
DTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLV
MKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL
GHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQ
NPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQ
LSAPKKETKPPEEMLPIVTTDSVSFTVAPSTPATTTTCTATGPPTPQFSYHDINVYALAG
LAPHITINVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA
LDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMME
EAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQ
AERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDV
AHIYDKCISDLEQHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEG
LLDATSGADTDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAV
ELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSGSHITEADLFHTI
ETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGL
REKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVE
ISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGI
VVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPT
KAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQ
ILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPN
LKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVEGATLNH
KTVHNRLVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTG
AS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaagaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacaatttctgatccaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccgtcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaagaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcagtttgtgaagcagaagcttcctgaccttctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcgggcagaagggcacgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagacttaaacaagaccatgatggagagttcccttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtcacagccagccaggtggccagagtgctgggcatgatggcccgcact
cactccgggctgtcagacggcattggcctacagtccatttccaatccagtgggcggaggg
atctggagtgatgggaaggacaagagtgatggttctcaggcacacacctggaatgttgaa
gttctgattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaagtgacctat
gagcttgatcaccctggctttctgatccgggacagtaaggggcttcagatagtggtatat
ggggtccagaggggactgggaatggaggtgttcccagtggatctcatctacagaccgtgg
aagcatgcagaaggacagttatcattcattcagcactccctgatgagtcctgaagtgttc
tgttttgctgactacccctgtcatacggttgctattgacatcctgaaggccccacctgag
gatgacaacagagagatagctacatggaagagcttggaccttgtggagagccttttgcgc
ctatctgaagttgggcattatgagcaggtgaagcagctctttagctttcccatcaagcac
tgcccagacatgttggtgttggcactgctacagatcagcacctcctggcacacactgcgt
catgagctcatttctaccctcatgcccatcttcctgggcaaccaccccaactccgccatc
atcttgcactatgcctggcatggacagggccagtccccctcaatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatatgaccaggccaagctatctcgt
atcctggatgtggctcaggacttgaagtctctatcaatgctgctgaatggtactccattt
gcctttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcatggggagccattcatccaggcgtgcgtcacgttc
ctgaagagacgatgtccctctatcatgggtggtttgaccccagagaaagaccagccgaag
agtgctcaacttcctcctgaaacactggctacaatgcttgcatgtctgcagtcttgtgca
gggagtgtgtctcaagagctgtcggagacaatcttgacaatggtggccaactgtagcaat
gtgatgaataaggcccggcagccgccaccaggagtcctgccaaagggacgagctcccagc
accagcagcttagatgctatctcacctgttcaaatggaccctctctctgcgatgagctct
ttgagtctaggtgtctcgtccacttctcatactccgagcatgcaagggttccccaacctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctaccaaac
ccaaaccccagcacagctttcccaggaatcaaccccctctcttcacagctccaaggtcct
ctgagctcaagcttgactgggattggctcaggtttgggcatgcctgctgtcagcagtgac
ccctttggcaccaggaagatgagcacaccggggctaaaccctcccacgtttcagcagagt
aagatgaaggcctctgacctttctcaggtgtggcccgaggcaaaccagcactttagtaag
gagattgacgacgaggccaacagctatttccagcgcatctacaaccatccaccacacccc
acgatgtctgtggatgaggtgctggaaatgctgcagagatttaaggactcgaacatcaag
cgggaacgggaagtttttaactgcatgctgaggaatctgtttgaggagtacagattcttc
cctcagtatccagacaaagagctgcacatcaccgcatgcctctttgggggaatcattgag
aagggcctggtcacttacatggcgctgggcttggccttacgatacgtcctggaagcctta
cgcaaacctttcgggtcaaagatgtattactttgggattgctgctctagatagatttaaa
aatagactgaaggactatccccagtactgtcagcacttggcatcaatagcccatttcctg
cagttcccgcaccatttacaagagtatatagagtatggccagcaatccagagaccctcct
gtgaagatgcagggctccattaccaccccaggcagcctggctctagcccaggctcaagct
cagtctcagacccctaaagcccccctacctgtccaagccagcaccttagtgaccacagcc
acaacgaccaccactgctgccaaaaccaccaccatcacaagacctacagctgttggcccg
aagaaggacgtgccagtaagtgaacacagaccaatgccttcaatcaacaccacaaacatt
gacaccctgttggtggccacagaccagactgaaaggatcgttgagcccccagagaacgtt
caagagaagattgcgttcatcttcaacaacttatcccaatcaaacatgacccaaaaggtg
gaggaactgaaagagactgtgaaagaagaattcatgccctgggtctctcaatacctggtc
atgaagcgcgtcagcattgagcccaacttccacagcctgtattctaactttctggacaca
ctgaaaaacccagagtttgttaagatggttctcaacgagacttacagaaacatcaaggtc
cttcttacctctgataaggcagctgctaacttctcagatcgatccctgctgaagaatttg
ggtcactggcttggaatgatcacccttgctaaaaacaaacccatcctgtacactgatctg
gagctaaagtctctcttgctggaggcttatgtgaaaggccagcaggagttactgtatgtt
gttccctttgtggccaaagtcttggaatcaagtctgcggagtgtgatcttcagaccgcag
aatccttggaccatgggtatcatgaatgtactggctgagctccaccaagaacatgactta
aagcttaacctcaagtttgagatcgaggtgctctgcaagaatctgtctctggacatcagt
gagctgaagccaggaaacctgctgagagacaaagagaagctgaagaatttggaggagcag
ctctctgcaccaaagaaagagaccaagcctcctgaagaaatgctgcctatagttactaca
gactctgtttcatttacagtcgctccttcgactccggccaccaccacaacctgtacggcc
accgggccacccacgccacagttcagctaccatgacatcaatgtgtatgccctggctggt
cttgccccacacatcaccatcaatgttaacatcccactgctgcaggcccaccctcagctg
aagcagtgcgtgagaccagcaattgagcgtgccgtacaggagcttgtgcacccagtggtg
gaccgatcaatcaagatcgccatgaccacctgcgagcagatagttcggaaggactttgcg
ctggactctgaggagtctcacatgcgtgtggctgcccaccacatgatgcgcaacttgacc
gccggcatggccatgatcacctgcagagagccgctgctcatgagcatcgccaccaacttg
aagaacagctttgcagcagctcttagggcacccacaccccagcagagagagatgatggaa
gaggcggctgctcgcatcgcacaggacaactgtgagcttgcgtgttgctttatccaaaag
acagcagtggagaaagctggacctgagatggacaagagactggcaactgaatttgagctg
aggaagcacgctcgtcaagaaggccgccgctactgtgaccccatggtgctcacctatcag
gctgagcgtatgccagagcagatcagactgaaggtcggtggagtggatcctaaacagctg
gctgtttatgaggagttcgcccgaaatgttcctggcttcctacccagtaatgacctgtct
cagcccactggtttccttgctcaaccaatgaagcaacaggcatggcccactgatgatgtg
gctcacatctacgataagtgcatctcagaccttgagcagcacctgcatgctattccacca
gcattggccatgaacccacagacccaggccatacgcagcctcctggaggcagttgtcatg
gctaggaactcccgtgatggcattgctgccctgggacttttgcaaaaggctgtggagggt
ctgctggatgccaccagtggtgctgatactgatctgttgctaagctacagggagtgccac
ctgctggtgctgaaagccctacaggatggtcgtgcctacggtccacagtggtgcaacaaa
caaatcaccagatgcctgattgagtgcagagatgaatacaagtacaacgttgaggccgta
gagctcctcatcagaaaccacctggtcaacatgcagcagtacgacttacacctggctcag
tccatggagaacgggctgaactacatggccgtggcgttcgccatgcagctagtgaagcta
cttctggttgatgaacgcagcgggagccacatcactgaagcagatctcttccacaccatt
gagacactgatgaggaccagtgcccactccagagccaacgctcctgaaggtttgccccag
ctgatggatgttgtccgctctaactacgaggccatgatcgatcgtcaccatggtgggcca
aacttcatgatgcactctgggatttctcaagcctctgagtatgatgacccaccaggtctt
agagagaaggcagagtacctgctaagagaatgggtcaacctgtaccactcagcagctgca
ggaagggacagcactaaggccttctctgcatttgttggccagatgcaccagcagggcatc
ctgaagacagatgacctcatcactcgcttcttccggctgtgcacagagatgtgcgtggag
atcagttaccgtgctcaagccgaacagcagcacccaaccaccagccctgccatcatcagg
gccaagtgctaccataacctggatgcttttgttcggctcatcgcccttctggtcaaacac
tccggagaggccaccaacacagtcaccaaaatcaacctgctcaacaaggttctgggcatt
gtggtaggtgtgttgatccaagatcacgatgtgagacagacagagttccaacagcttcca
taccaccgaatcttcattatgctcctgctggagcttaatgcacctgagcatgtgctggag
accatcaacttccagaccctcactgccttctgcaacacctttcacatcctgaggccgact
aaagcacctggttttgtgtatgcttggctggagctcatctctcaccgcatcttcattgcc
aggatgcttgcgcacacaccacaacaaaagggttggccaatgtatgctcagctgctgata
gatttgttcaagtatcttgcacccttcctaaggaatgttgaactcaacaaacctatgcaa
attctctacaagggaacacttcgtgtgctgcttgtcctgctacacgacttcccagaattc
ctgtgcgactaccattatggattttgcgacgtcatcccacccaattgcatccagctgagg
aacctgatcctgagtgcctttccccgcaacatgaggcttccagaccccttcacccctaat
ctgaaggtggatatgctgagtgaaatcaatatcgctccccgcatcctcactaacttcacc
ggtgtgatgccgtcccagtttaagaaggatcttgactcttacctcaagacccgctctcct
gtcaccttcctctctgagctgcgcagcaacctgcaggtagagggtgccactctgaatcac
aaaaccgttcacaacagactcgtgtcgaatgagcccggaaaccgctacaacattcagctg
atcaatgctctcgtgctgtacgttggaacccaggccattgcccacatccacaacaaaggt
agcactccttccatgagcaccatcacgcactcggcacacatggacatcttccagaacctc
gcagtcgatctagacactgaaggccgctatctattcctgaatgcgatagccaatcagctg
cgttatccaaacagccatacacactactttagttgtaccatgctgtatctgtttgccgag
gccaatgctgaagccattcaagagcagatcaccagggtcctgctggagaggttgattgtg
aacaggccgcacccatggggtctgctgatcaccttcatagagctgatcaagaaccctgcc
tttaagttctggagccatgattttgtgcactgcgccccagagatcgagaagttgttccag
tcggtagctcagtgctgcatgggacagaagcaggcccagcaggtgatggagggaacaggt
gccagttag
DBGET
integrated database retrieval system
