Pimephales promelas (fathead minnow): 120468942
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Entry
120468942 CDS
T08155
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120468942 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120468942 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120468942 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pprm00535
]
120468942 (col9a1a)
Proteoglycans [BR:
pprm00535
]
Extracellular matrix (ECM) proteoglycans
Others
120468942 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120468942
NCBI-ProteinID:
XP_039513530
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MAHAGTLRMSVLLIFLQLVLVISAQRGLVGPRGLPGPPGLPGFSGVDGIDGERGPGPGPD
GPPGLDGDKGKDGLNGLPGKPGADGLTGPLGVPGPVGPPGQKGEPGEPGLRGAPGVGEDG
EAGADGEDGLPGELGKVGPPGSRGPRGSVGAKGLPGPRGPPGVWDGKELCPNACTSGLNG
YTGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGPHGETGAQGLPGRQGLRGITGMMGSKG
DRGARGNVGDLGSQGIQGAPGDRGQRGKVGETGPKGAQGPPGLQGLMGLPGPKGEAGLPA
VDARDGIPGLPGVKGLPGKVGSPGDAGLQGFPGLPGISGAKGHMGAKGNTGDPGVAGLIG
NNGKTGERGEQGEVGPVGARGGPGERGVRGPDGPAGLPGARGAKGDPGLPGLPGPAGFIG
QKGDRGAVGLTGPKGEQGPSGEEGTPGDKGDVGEHGEPGEKGSTGKPGDAGNKGPEGGRG
QHGPEGPPGEPGPRGMQGDRGVPGLAGRQGRPGRAPTDEHIKQVCMRVLHGQLAQLAASL
TRPESGISGLPGPPGPPGPTGPAGDNGFPGHPGSRGLPGLKGPPGLLGRKGPKGDQGDRG
DRGPTLEGSKGIPGPPGLPGMPGTPAYGSNGRDGLRGPAGVPGMPGVPGPPGPPGLNGYC
ESSQCVLQAGATPISDSNMKGPDSL
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgccgggactctacgcatgtccgtgctgctgattttcctgcagttagtcctg
gtcatctcggcacagagggggctagttggccctagagggttgcctggacctccagggctt
cctggattttctggagttgacggcattgatggtgagaggggtcctggccccggccctgat
ggccctccaggccttgatggggacaaaggcaaagatggattaaatggccttccgggaaaa
cctggagcggatggtttgactgggccccttggtgtacctggccctgttggccctcctgga
cagaaaggtgaaccgggtgagccaggactaagaggagcccctggtgttggcgaggatggt
gaagctggtgctgatggggaagatggattacctggagagctgggcaaagttggacctcct
ggaagtcgtggaccgagaggttctgttggtgcaaaaggactgccagggcccagaggccct
cctggagtctgggatgggaaggagttgtgtccaaatgcctgtacttccggccttaatggt
tacacaggtctccctggcatgaagggtcacaaaggtgtcaaaggtgaatcaggtgaacca
ggaaggcaaggacataagggagaagaaggagaccagggaccacatggagagacgggtgca
caaggattacctggtcggcagggtttgagaggaatcactgggatgatgggctctaaaggc
gacaggggagctcgtgggaatgttggcgacctgggctctcagggtattcagggcgctcct
ggtgatcggggccaaagaggaaaagtaggtgagactggaccaaaaggagctcagggacct
ccggggttgcagggacttatgggtcttcctggaccgaaaggagaagctggtttgcctgca
gtagatgctcgtgacggtattccaggactacctggagtaaagggtcttcctgggaaagtt
ggctcacctggtgacgctggacttcagggatttccaggtttgccaggaatttcaggagca
aaaggccacatgggtgcaaaaggaaacactggtgatccaggtgtggcaggtctgattgga
aataatgggaaaacaggtgaacgtggtgagcagggagaagtgggaccagtcggggcaaga
ggtgggccaggtgagagaggagtaagaggtccagatgggcctgcaggcttgccaggtgcg
aggggagctaaaggagatccgggcctccctggtctcccagggcccgctggcttcattggg
caaaaaggcgacaggggcgctgttggtctcactggtccaaaaggagagcaaggaccatct
ggtgaagagggaacaccgggagacaaaggagatgttggtgaacacggggagccaggcgag
aaaggatcgactggaaaaccaggggacgcaggaaataaagggccagaaggtggacgtggc
caacacggacccgaaggcccaccaggagagcctggtccaagaggcatgcaaggagacaga
ggggtgcctggactggctgggagacagggacgaccgggccgagcaccaacagatgaacac
atcaagcaggtctgcatgagggttttgcatgggcagcttgcccagttggctgccagtctg
acgaggcctgagtcgggcatctctgggttgccaggtcctcctggtccccctggccctaca
gggcctgctggagacaatggcttccctgggcatcctggaagcagaggactgccaggtctc
aaagggcccccaggtcttctagggagaaaaggacccaaaggtgaccaaggtgacagggga
gatagagggcccacactggaggggtctaaaggtatacctggaccaccagggctcccaggt
atgcctggtactcccgcatatggcagtaatggtcgtgatggcctgagaggaccagcaggt
gttcctggaatgccaggtgtgccgggaccacctggcccgcccggcctgaacggatactgc
gagtcatctcaatgcgtgcttcaagcaggtgcaacgccaatcagtgattccaacatgaag
ggaccagacagtctatga
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