Pimephales promelas (fathead minnow): 120473866
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Entry
120473866 CDS
T08155
Symbol
cacna1fa
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04010
MAPK signaling pathway
pprm04020
Calcium signaling pathway
pprm04260
Cardiac muscle contraction
pprm04261
Adrenergic signaling in cardiomyocytes
pprm04270
Vascular smooth muscle contraction
pprm04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120473866 (cacna1fa)
04020 Calcium signaling pathway
120473866 (cacna1fa)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
120473866 (cacna1fa)
09153 Circulatory system
04260 Cardiac muscle contraction
120473866 (cacna1fa)
04261 Adrenergic signaling in cardiomyocytes
120473866 (cacna1fa)
04270 Vascular smooth muscle contraction
120473866 (cacna1fa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprm04040
]
120473866 (cacna1fa)
Ion channels [BR:
pprm04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120473866 (cacna1fa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
120473866
NCBI-ProteinID:
XP_039519850
LinkDB
All DBs
Position
Unknown
AA seq
2097 aa
AA seq
DB search
MDVTQKDGAGLAGSDPSKTDTLNSTGSAGQKRAGGAKKHMQANKSALRAPRALCCLTLSN
PIRMAALALVEWKPFDIFILLAIFANCVALGVSKPFPEDDSNATNHNLEQVEYVFLVIFT
IETFTKILAYGLVMHPSAYIRSGWNLLDFIIVIVGLFSVIAEMGEHKPGEAHHAAGKPGG
LDVKALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIGLLVMFVIIIYAIIGLELF
IGRMHKTCYYVGTELMVDDDPTPCAFAGNGRFCVGNNTVCQGGWEGPNGGITNFDNIFFA
MLTVFQCITMEGWTDVLYWMNDSIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKER
EKAVCRGELQMAQEKQQMEEDMIGYMDWLIEAEDMDEDGNKRAVVAKKKMMKKYGWYKHS
EDGESDSDSEFEAFLDDDSGFCSSIMARLMAISFCEQLYHLNVVIRKNCRVAVKSTNFYW
LVLLLVFLNTAASASEHYGQPKWLTDIQERANKILLALFTLEMLMKLYSFGFQIYFMALF
NRFDCFVVCGGILETVLVEMELIPPIGISVLRCVRLIRIFKVTRHWAALSDLVGSLLNSM
KAICSLLLLLFLFLIIFALLGMQLFGGKFNFDETQMKRSTFDTFPSALLTCFQILTGEDW
NSVMYDGIMAYGGPVFPNMIVCIYFVILFVCGNYILLNVFLAIAVDNLAGDGGKKKKEEK
KEEDEEWEDDEEREEDAGNEMDDWEENEEFRAIEGLEGIGTPMKVESFQPKEKIVPIPDG
SSFFILGKKNCLRVACHNLIHHHYFTNIILVFIILSSFSLAAEDPIKTHSVRNVMLGYAD
YVFTTVFTIEIMLKMTVYGAFLHQGSFCRNAFNLLDLLVVSVSLTSFFLHSSAISVVKIL
RVLRVLRPLRAINRAKGLKSVIQCVFVAIRTIGNILIVTTLLQFMFACIGVQLFKGRFYR
CTDEAKHTPEECKGTFVVFKDGDMNHPMVRERVWENSDFNFDNVLMGMLALFTVSTFEGW
PQLLYKAIDANAENRGPIYNYRVEISFFFVIYIIIIAFFMMNIFVGFVIITFREQGEAEF
KNCELNKNQRQCVYYALKAQPIKIYIPKNPSQLKFWKIINSSQFEYIMFVLILLNTLALA
VQHYEQSKLFNSVMDILNMIFTLLFTIEMIVKLLALRPYHYFIDAWNSFDALIVVGSLVD
IMIAEFSGGGGHGEGKDGESAKVSITFFRLFRVMRLVKLLSKGEGIRTLLWTFLKSLQAL
PYVGLLIAMIFFIYGVIGMQSFGKIAIDDDTELSRNNNFQTFFMAVLLLFRCATGEQWQE
IMLAALPGRRCDPESDFEPGEEYSCGSNLAYLYFISFFALCAFLIINLFIAVIMDNFEYL
TRDWTVLGTHHLDEFKRVWSDYDPEATGRIKHLDVVTMLRRIQPPLGFGKLCPHRVACRR
LVAMNVPLYPDGTVSFNATLFALVRTSLKIKTDGPIDQQNEELRAIIKKIWKRTKPKLLD
EVIPPPAGNEVTAGKFYASFLIQDYFKKFRKRKEKERKKKGKDKSASLQAGLRTLQDLAP
EMRLAMAMEDEEGLEGLEGEMIEEEDFFRSDSVFSDAPPTPAMSTPRSTPMPPHLDETSV
SIEVPPRIRNGSLMLEEALLESRPVSALSENEVIIDQPQRLSPLPSRWASSHSKLTPFSM
LNTNQRNNTTSACEYIPPPSPDGGVGGGVVIPGGNGEAVTGEAIQVGGGGEGVMEGAVTG
GGLTEMPNPPEQSAVSREDPHSAVSHDRQWFPEVPPAQIAAPNGSSECVAPVQPIDNISN
SYQGNSQVVGGYNGNSYPGNGYNGNGTNGTDYPGNRYSSNGYSSNGYNGNGYHSNGYNGN
GYNNNEHSGTGFAARRRMLPPTPLGRKPNFNIQCLRRQGSNEDLPIPGTYSQNSPPCRTR
IQTQNSLDSRRSSISSAVSSASWMNNQARRGPLLYAPLILVNEMGGTQAMWSDANGSASL
PASARPGWIGSGMAGVAQLPRAYNTLRVPSQQSSGYIEKGSADSLVESILISEGLGLYAK
DPKFVDFAKREIAGACHMTIDEMESAANDLLSQGRAGQRIGRLEEDLSDEMNCVISY
NT seq
6294 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgacacagaaagatggggccggcttggccgggtctgaccccagcaagacggac
acactcaactcaacaggttctgcagggcaaaagagagctggaggagccaagaagcacatg
caagcaaacaaatcggccctgcgtgctcccagagctctgtgctgcctcactctcagcaat
cctatacgtatggcagcactggccctagtggaatggaagccctttgatatattcatttta
ctggccatttttgcaaattgtgttgcccttggtgtgtcaaaaccatttcccgaagatgat
tccaatgccaccaaccacaatctggaacaagtggagtatgtgtttctggtcattttcacc
atcgaaacattcacaaagattcttgcgtacggtctggtcatgcatcctagcgcctacatc
cgcagtgggtggaacttgctggattttatcattgtcattgtaggtcttttcagtgtgata
gctgaaatgggagagcacaaaccaggagaggcacatcacgcggcaggcaaaccaggtggt
cttgatgtcaaagctctgagagctttcagagtactacgacccctgcgccttgtttctgga
gtgcctagtctgcagattgtcttgaactccatcatgaaggccatggtgcccttgctccac
atcggtctgctggtcatgtttgtcatcattatttatgccatcattgggctggagctcttc
ataggcagaatgcacaagacctgctactatgtagggacagagctaatggtggacgatgat
cctacaccatgtgcttttgccggcaacggtcgcttctgcgtggggaataacacggtgtgt
cagggaggatgggaaggacctaatggaggcatcaccaactttgacaatatcttcttcgcc
atgctaaccgtgttccaatgcattacaatggagggctggactgatgtgctctactggatg
aatgattccatcgggtttgagctgccttgggtttattttgtgtctctggtaatttttgga
tctttctttgtcctcaatctcgtgttgggtgttttgagcggtgagttctctaaagagaga
gagaaggctgtgtgtcgtggtgaactgcagatggcccaggagaaacaacagatggaggag
gacatgatcggctacatggactggctcattgaagcagaggacatggatgaggatggaaat
aaacgtgctgtggtggctaagaaaaaaatgatgaagaaatatggctggtacaaacacagt
gaagatggagaatcagattcagactctgagtttgaagcattcttggatgatgacagtggt
ttctgttcatctatcatggcacgactgatggctataagtttttgtgagcagctgtaccac
ttaaatgtggtcattagaaagaactgccgtgtggctgtaaagtccaccaatttctactgg
ctggtgctactgctggtgttcctcaacactgccgccagcgcctctgaacactacggccag
cccaagtggctcacggatatacaggaacgagcaaataagatccttctggctctgtttacg
ctggagatgctgatgaaactctacagcttcggctttcagatctacttcatggcactcttt
aatcgttttgattgtttcgtggtgtgtggtggaatcctggagacggtgctggtggagatg
gaactaatcccgcccatcggaatctctgtgctgcgctgcgttcgtctgatccgtatcttc
aaagtcacaagacactgggctgccctctcagacctggtgggctctttgctgaattcaatg
aaagccatttgctccctcctgctgctgctcttcctcttcctcatcatcttcgctctcctg
ggcatgcagctctttggtggaaagttcaactttgatgaaactcaaatgaaaagaagcacc
tttgacacttttccatctgccctgctcacctgtttccagatcctaacaggggaggactgg
aactctgtcatgtatgatggcatcatggcgtatggtggaccagtgtttcccaatatgatt
gtctgtatttactttgtcattcttttcgtctgtggtaactacatcttgctgaatgtcttc
ttggctatcgctgtggacaacttagccggagatggtggcaaaaagaaaaaagaggagaaa
aaagaagaggatgaggaatgggaagatgatgaagaaagagaggaagatgctggtaatgaa
atggatgattgggaagaaaatgaggagtttagagcaattgaagggcttgagggtataggc
actcccatgaaagtcgaaagttttcaacccaaggagaaaattgtaccaattcctgatgga
agttcatttttcatccttggaaagaaaaactgtctcagagttgcctgccacaacctgatt
catcatcattacttcaccaacatcatccttgtcttcatcatactgagtagtttttcattg
gccgctgaagacccaatcaaaactcattctgtccggaacgttatgctgggctatgctgat
tatgtctttaccaccgtctttactattgagatcatgttgaagatgactgtgtatggagct
tttcttcatcaagggtccttctgcagaaacgcctttaaccttcttgaccttctggtcgtc
agtgtgtccctcacctctttcttcttgcattcgagtgccatttctgtggtaaagattctc
agagtattgcgagtgctcaggcctcttcgagctatcaacagggcaaagggactcaagagc
gtgattcagtgtgtgttcgtggccatccgtactattggcaacatcctcattgtcaccact
ctcctccagtttatgttcgcttgtattggtgtgcagcttttcaagggccggttctacaga
tgcactgatgaggcaaaacacacacctgaagagtgcaagggcacttttgtggtgttcaaa
gatggtgatatgaaccacccaatggtgagggagagagtttgggagaacagcgactttaac
ttcgacaatgtgctgatgggcatgcttgcactattcaccgtctctacgtttgaaggctgg
ccacagttgttgtacaaagccatcgatgctaatgcagagaacagaggacccatctataac
taccgtgtggagatttccttcttcttcgtcatctacatcatcattatcgccttcttcatg
atgaacatctttgtgggttttgtcatcattaccttccgtgaacaaggagaggctgagttc
aaaaactgcgaactaaacaaaaatcagcgacaatgtgtgtattacgcattgaaagctcag
ccaataaagatttacatacccaaaaacccttctcaactcaaattttggaagatcatcaat
tcctctcagtttgagtacattatgtttgtgctcattctgctcaacacgctcgcactggct
gtacagcactatgagcagtccaaactcttcaactctgtgatggacatcctgaacatgatc
ttcactttgctgtttactattgagatgatcgtcaaacttctggctctgagaccttatcat
tattttatagatgcctggaactcttttgatgcactgatagtggtgggcagtttggtggac
atcatgattgcagagttcagtggtggaggaggccatggtgaggggaaagatggggagagc
gccaaagtatccatcactttcttccgtcttttccgagttatgcgactagtcaagctgctc
agtaagggtgaaggcattcgaaccctcctttggaccttccttaaatctctacaggcactg
ccatacgtcggcctactcattgctatgatctttttcatctatggtgtgattggaatgcag
tcatttgggaagatagctattgacgacgatactgaactcagtcggaacaacaatttccaa
acctttttcatggctgtacttctgcttttcagatgtgcaacgggtgaacagtggcaggag
atcatgcttgcggcactgccaggacgtcggtgtgacccagagtctgactttgagccaggg
gaggagtacagctgtggaagcaacctggcatacctctatttcatcagtttctttgcactc
tgtgccttcctgatcattaacttgttcatcgctgtcatcatggataactttgagtatctg
actagagactggactgtgctgggcactcatcacctcgatgagtttaaacgagtctggtca
gattacgacccagaagccacgggaaggattaaacatctagatgtagtcaccatgttgcgc
agaattcagcctccgctgggctttgggaaactctgtccacatcgagtagcatgtaggaga
ctggttgctatgaatgtgcctctctatcctgatggtactgtgtccttcaacgccaccctg
tttgctctcgtcagaacttcacttaagattaaaacagatggacccattgaccagcagaac
gaggagctgagagctatcatcaagaagatctggaaacgtaccaaacccaaactgctagat
gaagttatacctccacctgcagggaatgaggtgactgcaggaaagttctatgccagcttc
ctgattcaggactactttaaaaagtttcgtaagcgaaaagagaaagagaggaagaagaaa
ggcaaagataagtcagcctctctccaggctgggttacgcacactacaggatctggcccca
gagatgcgtctggctatggcaatggaggatgaggaagggctggaagggctggagggggag
atgattgaagaagaagatttcttcaggagtgacagcgtcttcagtgatgctcctcccaca
ccggccatgtccacccctagaagcacccctatgcccccccatctggacgagacctccgtg
agcattgaggttcctcctagaatacgcaatgggagcttaatgctggaggaggctctgctg
gagtcccgtccggtctctgccctttccgaaaacgaagtgattatcgatcagcctcagaga
ttgtctcccctgcccagtaggtgggcctccagtcacagcaaactcacccctttttcgatg
ctgaataccaaccaaaggaataatacaactagtgcttgtgaatatattcctcccccatct
ccggatggaggagtcggaggaggggtcgtaattccaggagggaatggagaagcagtcact
ggagaagccatacaagtaggaggtggaggtgaaggagtgatggaaggagcagtcacagga
ggaggactaacagagatgccaaatcctccagagcaaagtgctgttagcagggaggaccct
catagtgctgtctcacatgatagacagtggtttcctgaggttcctccggcacaaattgca
gcacccaatgggagcagtgaatgtgtggccccagttcagcccattgacaatatcagcaat
agttaccaaggcaacagccaagttgttggtggctacaatggaaatagttaccctggaaat
ggctacaatgggaatggtaccaatgggactgattatccagggaatcgttactccagcaat
ggctatagcagtaatggctacaatggtaacggttatcatagtaatggatacaatggtaac
ggatacaacaacaatgaacacagtggcactggatttgctgctcggcgacgcatgcttcca
ccaactcccttaggccgaaagcccaactttaacatccagtgtttgagaaggcaaggcagc
aatgaggatctcccaatcccaggcacttacagccaaaattccccaccctgtaggacacgt
atacagactcaaaacagcttagactcacggcggagcagcatttcatctgcagtttcttcg
gcctcttggatgaacaaccaggccaggcggggtcctctcctctatgccccccttattcta
gtgaacgagatggggggcactcaggctatgtggagtgacgccaatggcagcgccagcctg
ccggcatcggcccgtcccgggtggattggcagtggaatggcaggtgtagcccagctgcct
cgggcgtacaacactctcagagtgccctcccaacagagctccggatacatcgagaaggga
agcgctgacagccttgtggagtcgatcctgatctctgaaggcttgggtctatatgcaaaa
gaccccaaatttgttgactttgcaaaacgggaaattgcaggtgcctgtcacatgactatt
gacgaaatggagagcgctgcaaatgacctcctaagtcaagggagggcagggcaacgaata
ggacgcctcgaagaggatctgtctgatgagatgaactgtgttatatcatactaa
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integrated database retrieval system
